widdowquinn / pyani
Files Coverage
pyani/__init__.py 100.00%
pyani/anib.py 92.81%
pyani/aniblastall.py 93.93%
pyani/anim.py 86.40%
pyani/blast.py 30.00%
pyani/dependencies.py 51.72%
pyani/download.py 96.19%
pyani/fastani.py 67.92%
pyani/logger.py 84.61%
pyani/nucmer.py 33.59%
pyani/pyani_classify.py 100.00%
pyani/pyani_config.py 100.00%
pyani/pyani_files.py 82.53%
pyani/pyani_graphics/__init__.py 100.00%
pyani/pyani_graphics/mpl/__init__.py 96.71%
pyani/pyani_graphics/sns/__init__.py 68.42%
pyani/pyani_graphics/tree/__init__.py 19.69%
pyani/pyani_jobs.py 88.23%
pyani/pyani_orm.py 90.47%
pyani/pyani_report.py 87.50%
pyani/pyani_tools.py 93.26%
pyani/run_multiprocessing.py 100.00%
pyani/run_sge.py 15.74%
pyani/scripts/__init__.py 94.11%
pyani/scripts/average_nucleotide_identity.py 62.58%
pyani/scripts/delta_filter_wrapper.py 100.00%
pyani/scripts/genbank_get_genomes_by_taxon.py 28.43%
pyani/scripts/parsers/__init__.py 90.00%
pyani/scripts/parsers/anib_parser.py 100.00%
pyani/scripts/parsers/aniblastall_parser.py 100.00%
pyani/scripts/parsers/anim_parser.py 100.00%
pyani/scripts/parsers/classify_parser.py 100.00%
pyani/scripts/parsers/common_parser.py 100.00%
pyani/scripts/parsers/createdb_parser.py 100.00%
pyani/scripts/parsers/download_parser.py 100.00%
pyani/scripts/parsers/fastani_parser.py 100.00%
pyani/scripts/parsers/index_parser.py 100.00%
pyani/scripts/parsers/listdeps_parser.py 100.00%
pyani/scripts/parsers/plot_parser.py 100.00%
pyani/scripts/parsers/report_parser.py 100.00%
pyani/scripts/parsers/run_common_parser.py 100.00%
pyani/scripts/parsers/scheduling_parser.py 100.00%
pyani/scripts/parsers/tree_parser.py 81.81%
pyani/scripts/pyani_script.py 79.36%
pyani/scripts/subcommands/__init__.py 100.00%
pyani/scripts/subcommands/subcmd_anib.py 62.03%
pyani/scripts/subcommands/subcmd_aniblastall.py 80.00%
pyani/scripts/subcommands/subcmd_anim.py 77.32%
pyani/scripts/subcommands/subcmd_classify.py 93.87%
pyani/scripts/subcommands/subcmd_createdb.py 100.00%
pyani/scripts/subcommands/subcmd_download.py 92.56%
pyani/scripts/subcommands/subcmd_fastani.py 80.74%
pyani/scripts/subcommands/subcmd_index.py 87.80%
pyani/scripts/subcommands/subcmd_listdeps.py 25.00%
pyani/scripts/subcommands/subcmd_plot.py 93.40%
pyani/scripts/subcommands/subcmd_report.py 100.00%
pyani/scripts/subcommands/subcmd_tree.py 26.66%
pyani/tetra.py 95.08%
Project Totals (58 files) 74.48%
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