widdowquinn / pyani
Files Coverage
pyani/__init__.py 100.00%
pyani/anib.py 92.07%
pyani/aniblastall.py 90.00%
pyani/anim.py 85.12%
pyani/blast.py 30.00%
pyani/dependencies.py 50.00%
pyani/download.py 96.19%
pyani/logger.py 84.61%
pyani/nucmer.py 33.59%
pyani/pyani_classify.py 100.00%
pyani/pyani_config.py 100.00%
pyani/pyani_files.py 82.53%
pyani/pyani_graphics/__init__.py 100.00%
pyani/pyani_graphics/mpl/__init__.py 97.31%
pyani/pyani_graphics/sns/__init__.py 96.10%
pyani/pyani_jobs.py 88.23%
pyani/pyani_orm.py 89.18%
pyani/pyani_report.py 93.87%
pyani/pyani_tools.py 93.20%
pyani/run_multiprocessing.py 100.00%
pyani/run_sge.py 15.74%
pyani/scripts/__init__.py 94.11%
pyani/scripts/average_nucleotide_identity.py 62.71%
pyani/scripts/delta_filter_wrapper.py 100.00%
pyani/scripts/genbank_get_genomes_by_taxon.py 28.43%
pyani/scripts/parsers/__init__.py 89.28%
pyani/scripts/parsers/anib_parser.py 100.00%
pyani/scripts/parsers/aniblastall_parser.py 100.00%
pyani/scripts/parsers/anim_parser.py 100.00%
pyani/scripts/parsers/classify_parser.py 100.00%
pyani/scripts/parsers/common_parser.py 100.00%
pyani/scripts/parsers/createdb_parser.py 100.00%
pyani/scripts/parsers/download_parser.py 100.00%
pyani/scripts/parsers/index_parser.py 100.00%
pyani/scripts/parsers/listdeps_parser.py 100.00%
pyani/scripts/parsers/plot_parser.py 100.00%
pyani/scripts/parsers/report_parser.py 100.00%
pyani/scripts/parsers/run_common_parser.py 100.00%
pyani/scripts/parsers/scheduling_parser.py 100.00%
pyani/scripts/pyani_script.py 75.47%
pyani/scripts/subcommands/__init__.py 100.00%
pyani/scripts/subcommands/subcmd_anib.py 62.03%
pyani/scripts/subcommands/subcmd_aniblastall.py 80.00%
pyani/scripts/subcommands/subcmd_anim.py 77.71%
pyani/scripts/subcommands/subcmd_classify.py 93.87%
pyani/scripts/subcommands/subcmd_createdb.py 72.22%
pyani/scripts/subcommands/subcmd_download.py 92.56%
pyani/scripts/subcommands/subcmd_index.py 87.80%
pyani/scripts/subcommands/subcmd_listdeps.py 25.00%
pyani/scripts/subcommands/subcmd_plot.py 100.00%
pyani/scripts/subcommands/subcmd_report.py 100.00%
pyani/tetra.py 95.08%
Project Totals (52 files) 76.24%
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