widdowquinn / pyani
Files Coverage
__init__.py 100.00%
anib.py 92.07%
aniblastall.py 90.00%
anim.py 84.87%
blast.py 30.00%
dependencies.py 50.00%
download.py 96.19%
logger.py 84.61%
nucmer.py 33.59%
pyani_classify.py 100.00%
pyani_config.py 100.00%
pyani_files.py 82.53%
pyani_graphics/__init__.py 100.00%
pyani_graphics/mpl/__init__.py 97.31%
pyani_graphics/sns/__init__.py 96.10%
pyani_jobs.py 88.23%
pyani_orm.py 89.18%
pyani_report.py 93.87%
pyani_tools.py 93.20%
run_multiprocessing.py 100.00%
run_sge.py 15.74%
scripts/__init__.py 94.11%
scripts/average_nucleotide_identity.py 62.71%
scripts/delta_filter_wrapper.py 100.00%
scripts/genbank_get_genomes_by_taxon.py 28.43%
scripts/parsers/__init__.py 89.28%
scripts/parsers/anib_parser.py 100.00%
scripts/parsers/aniblastall_parser.py 100.00%
scripts/parsers/anim_parser.py 100.00%
scripts/parsers/classify_parser.py 100.00%
scripts/parsers/common_parser.py 100.00%
scripts/parsers/createdb_parser.py 100.00%
scripts/parsers/download_parser.py 100.00%
scripts/parsers/index_parser.py 100.00%
scripts/parsers/listdeps_parser.py 100.00%
scripts/parsers/plot_parser.py 100.00%
scripts/parsers/report_parser.py 100.00%
scripts/parsers/run_common_parser.py 100.00%
scripts/parsers/scheduling_parser.py 100.00%
scripts/pyani_script.py 75.47%
scripts/subcommands/__init__.py 100.00%
scripts/subcommands/subcmd_anib.py 62.03%
scripts/subcommands/subcmd_aniblastall.py 80.00%
scripts/subcommands/subcmd_anim.py 77.71%
scripts/subcommands/subcmd_classify.py 93.87%
scripts/subcommands/subcmd_createdb.py 72.22%
scripts/subcommands/subcmd_download.py 92.56%
scripts/subcommands/subcmd_index.py 87.80%
scripts/subcommands/subcmd_listdeps.py 25.00%
scripts/subcommands/subcmd_plot.py 100.00%
scripts/subcommands/subcmd_report.py 100.00%
tetra.py 95.08%
Folder Totals (52 files) 76.23%
Project Totals (52 files) 76.23%
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