widdowquinn / pyani
Files Coverage
pyani/__init__.py 100.00%
pyani/anib.py 18.29%
pyani/aniblastall.py 33.33%
pyani/anim.py 20.16%
pyani/blast.py 0.00%
pyani/dependencies.py 50.00%
pyani/download.py 35.23%
pyani/logger.py 30.76%
pyani/nucmer.py 0.00%
pyani/pyani_classify.py 35.00%
pyani/pyani_config.py 90.32%
pyani/pyani_files.py 26.98%
pyani/pyani_graphics/__init__.py 29.41%
pyani/pyani_graphics/mpl/__init__.py 17.44%
pyani/pyani_graphics/sns/__init__.py 6.15%
pyani/pyani_jobs.py 23.52%
pyani/pyani_orm.py 48.64%
pyani/pyani_report.py 0.00%
pyani/pyani_tools.py 40.77%
pyani/run_multiprocessing.py 27.02%
pyani/run_sge.py 15.74%
pyani/scripts/__init__.py 47.05%
pyani/scripts/average_nucleotide_identity.py 5.76%
pyani/scripts/delta_filter_wrapper.py 0.00%
pyani/scripts/genbank_get_genomes_by_taxon.py 10.62%
pyani/scripts/parsers/__init__.py 17.85%
pyani/scripts/parsers/anib_parser.py 0.00%
pyani/scripts/parsers/aniblastall_parser.py 0.00%
pyani/scripts/parsers/anim_parser.py 0.00%
pyani/scripts/parsers/classify_parser.py 0.00%
pyani/scripts/parsers/common_parser.py 0.00%
pyani/scripts/parsers/createdb_parser.py 0.00%
pyani/scripts/parsers/download_parser.py 23.80%
pyani/scripts/parsers/index_parser.py 0.00%
pyani/scripts/parsers/listdeps_parser.py 0.00%
pyani/scripts/parsers/plot_parser.py 0.00%
pyani/scripts/parsers/report_parser.py 0.00%
pyani/scripts/parsers/run_common_parser.py 0.00%
pyani/scripts/parsers/scheduling_parser.py 0.00%
pyani/scripts/pyani_script.py 15.09%
pyani/scripts/subcommands/__init__.py 90.90%
pyani/scripts/subcommands/subcmd_anib.py 16.66%
pyani/scripts/subcommands/subcmd_aniblastall.py 80.00%
pyani/scripts/subcommands/subcmd_anim.py 26.50%
pyani/scripts/subcommands/subcmd_classify.py 30.61%
pyani/scripts/subcommands/subcmd_createdb.py 27.77%
pyani/scripts/subcommands/subcmd_download.py 16.21%
pyani/scripts/subcommands/subcmd_index.py 19.51%
pyani/scripts/subcommands/subcmd_listdeps.py 25.00%
pyani/scripts/subcommands/subcmd_plot.py 11.53%
pyani/scripts/subcommands/subcmd_report.py 0.00%
pyani/tetra.py 18.03%
Project Totals (52 files) 20.09%
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