baileythegreen
Showing 1 of 1 files from the diff.
@@ -194,7 +194,7 @@
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| 194 | 194 | for fmt in outfmts: |
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| 195 | 195 | outfname = Path(args.outdir) / f"distribution_{matdata.name}_run{run_id}.{fmt}" |
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| 196 | 196 | logger.debug("\tWriting graphics to %s", outfname) |
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| 197 | - | DISTMETHODS[args.method[0]]( |
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| 197 | + | DISTMETHODS[args.method]( |
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| 198 | 198 | matdata.data, |
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| 199 | 199 | outfname, |
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| 200 | 200 | matdata.name, |
@@ -227,12 +227,13 @@
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| 227 | 227 | logger.info("Writing %s matrix heatmaps", matdata.name) |
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| 228 | 228 | cmap = pyani_config.get_colormap(matdata.data, matdata.name) |
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| 229 | 229 | for fmt in outfmts: |
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| 230 | - | outfname = Path(args.outdir) / f"matrix_{matdata.name}_run{run_id}.{fmt}" |
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| 230 | + | outfname = ( |
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| 231 | + | Path(args.outdir) / f"matrix_{matdata.name}_run{run_id}_{args.method}.{fmt}" |
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| 232 | + | ) |
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| 231 | 233 | logger.debug("\tWriting graphics to %s", outfname) |
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| 232 | 234 | params = pyani_graphics.Params(cmap, result_labels, result_classes) |
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| 233 | 235 | # Draw heatmap |
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| 234 | 236 | _, newicks = GMETHODS[args.method]( |
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| 235 | - | ||
| 236 | 237 | matdata.data, |
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| 237 | 238 | outfname, |
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| 238 | 239 | title=f"matrix_{matdata.name}_run{run_id}", |
@@ -281,7 +282,7 @@
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| 281 | 282 | logger.debug("\tWriting graphics to %s", outfname) |
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| 282 | 283 | params = pyani_graphics.Params(cmap, result_labels, result_classes) |
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| 283 | 284 | # Draw scatterplot |
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| 284 | - | SMETHODS[args.method[0]]( |
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| 285 | + | SMETHODS[args.method]( |
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| 285 | 286 | matdata1.data, |
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| 286 | 287 | matdata2.data, |
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| 287 | 288 | outfname, |
| Files | Coverage |
|---|---|
| pyani | 74.48% |
| Project Totals (58 files) | 74.48% |
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# This codecov.yml is the default configuration for
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# all repositories on Codecov. You may adjust the settings
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coverage: |
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project: true |
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layout: "header, diff" |
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behavior: default # update if exists else create new |
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