Commit ⋅ venelin/PCMBase

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docs/reference/PCMOptions.html has changed.

vignettes/PCMTracePruning.Rmd has changed.

docs/articles/PCMBase.html has changed.

vignettes/REFERENCES.bib has changed.

vignettes/PCMCreateModel.Rmd has changed.

vignettes/PCMBase.Rmd has changed.

@@ -1761,12 +1761,7 @@

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#' @seealso \code{\link{PCMInfo}} \code{\link{PCMAbCdEf}} \code{\link{PCMLmr}} \code{\link{PCMSim}} \code{\link{PCMCond}}
#' @examples
#' N <- 10
#' L <- 100.0
#' tr <- ape::stree(N)
#' tr$edge.length <- rep(L, N)
#' for(epoch in seq(1, L, by = 1.0)) {
#'   tr <- PCMTreeInsertSingletonsAtEpoch(tr, epoch)
#' }
#' tr <- PCMTree(ape::rtree(N))
#'
#' model <- PCMBaseTestObjects$model_MixedGaussian_ab
#'

Files		•	•	•	Coverage
R	4,131	1,475	0	2,656	35.71%
Project Totals (16 files)	4,131	1,475	0	2,656	35.71%

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comment: false

ignore:
  - R/AutoGeneratedModelTypes.R

coverage:
  status:
    project:
      default:
        target: auto
        threshold: 1%
    patch:
      default:
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        threshold: 1%

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1761	1761		#' @seealso \code{\link{PCMInfo}} \code{\link{PCMAbCdEf}} \code{\link{PCMLmr}} \code{\link{PCMSim}} \code{\link{PCMCond}}
1762	1762		#' @examples
1763	1763		#' N <- 10
1764		-	#' L <- 100.0
1765		-	#' tr <- ape::stree(N)
1766		-	#' tr$edge.length <- rep(L, N)
1767		-	#' for(epoch in seq(1, L, by = 1.0)) {
1768		-	#' tr <- PCMTreeInsertSingletonsAtEpoch(tr, epoch)
1769		-	#' }
	1764	+	#' tr <- PCMTree(ape::rtree(N))
1770	1765		#'
1771	1766		#' model <- PCMBaseTestObjects$model_MixedGaussian_ab
1772	1767		#'

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1	comment: false
2
3	ignore:
4	- R/AutoGeneratedModelTypes.R
5
6	coverage:
7	status:
8	project:
9	default:
10	target: auto
11	threshold: 1%
12	patch:
13	default:
14	target: auto
15	threshold: 1%

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