statnet / network
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#' \code{\link{network.extraction}},\code{\link{as.edgelist}}
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#' @references Butts, C. T.  (2008).  \dQuote{network: a Package for Managing
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#' Relational Data in R.} \emph{Journal of Statistical Software}, 24(2).
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#' \url{http://www.jstatsoft.org/v24/i02/}
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#' \url{https://www.jstatsoft.org/v24/i02/}
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#' @keywords classes graphs
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#' @examples
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#' 
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#' \code{\link{which.matrix.type}}
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#' @references Butts, C. T.  (2008).  \dQuote{network: a Package for Managing
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#' Relational Data in R.} \emph{Journal of Statistical Software}, 24(2).
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#' \url{http://www.jstatsoft.org/v24/i02/}
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#' \url{https://www.jstatsoft.org/v24/i02/}
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#' @keywords classes graphs
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#' @examples
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#' 
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#' @seealso \code{\link{as.matrix.network}}, \code{\link{network}}
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#' @references Butts, C. T.  (2008).  \dQuote{network: a Package for Managing
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#' Relational Data in R.} \emph{Journal of Statistical Software}, 24(2).
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#' \url{http://www.jstatsoft.org/v24/i02/}
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#' \url{https://www.jstatsoft.org/v24/i02/}
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#' @keywords graphs manip
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#' @examples
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#' 

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# David Hunter <dhunter@stat.psu.edu> and Mark S. Handcock
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# <handcock@u.washington.edu>.
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#
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# Last Modified 06/05/21
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# Last Modified 06/06/21
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# Licensed under the GNU General Public License version 2 (June, 1991)
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# or greater
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#
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#' 
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#' @references Butts, C. T.  (2008).  \dQuote{network: a Package for Managing 
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#'   Relational Data in R.}  \emph{Journal of Statistical Software}, 24(2).  
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#'   \url{http://www.jstatsoft.org/v24/i02/}
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#'   \url{https://www.jstatsoft.org/v24/i02/}
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#'
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#' @author Carter T. Butts \email{buttsc@uci.edu} and David Hunter 
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#'   \email{dhunter@stat.psu.edu}
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#' @seealso \code{\link{network}}, \code{\link{as.network.matrix}}
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#' @references Butts, C. T.  (2008).  \dQuote{network: a Package for Managing
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#' Relational Data in R.} \emph{Journal of Statistical Software}, 24(2).
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#' \url{http://www.jstatsoft.org/v24/i02/}
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#' \url{https://www.jstatsoft.org/v24/i02/}
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#' @keywords classes graphs
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#' @examples
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#' 

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# David Hunter <dhunter@stat.psu.edu> and Mark S. Handcock
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# <handcock@u.washington.edu>.
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#
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# Last Modified 02/24/19
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# Last Modified 06/06/21
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# Licensed under the GNU General Public License version 2 (June, 1991)
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# or greater
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#
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#' \code{\link{network.edgelist}}
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#' @references Butts, C. T.  (2008).  \dQuote{network: a Package for Managing
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#' Relational Data in R.} \emph{Journal of Statistical Software}, 24(2).
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#' \url{http://www.jstatsoft.org/v24/i02/}
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#' \url{https://www.jstatsoft.org/v24/i02/}
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#' @keywords classes graphs
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#' @examples
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#' 
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#' \code{\link{set.vertex.attribute}}
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#' @references Butts, C. T.  (2008).  \dQuote{network: a Package for Managing
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#' Relational Data in R.} \emph{Journal of Statistical Software}, 24(2).
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#' \url{http://www.jstatsoft.org/v24/i02/}
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#' \url{https://www.jstatsoft.org/v24/i02/}
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#' @keywords classes graphs
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#' @examples
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#' 
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#'   \code{\link{as.matrix.network}}, \code{\link{network.extraction}}
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#' @references Butts, C. T.  (2008).  \dQuote{network: a Package for Managing
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#'   Relational Data in R.}  \emph{Journal of Statistical Software}, 24(2).  
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#'   \url{http://www.jstatsoft.org/v24/i02/}
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#'   \url{https://www.jstatsoft.org/v24/i02/}
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#' @author Carter T. Butts \email{buttsc@uci.edu}
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#' @examples
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#' #Create a network with three edges
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#'
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#' @references Butts, C. T.  (2008).  \dQuote{network: a Package for Managing 
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#'   Relational Data in R.}  \emph{Journal of Statistical Software}, 24(2).  
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#'   \url{http://www.jstatsoft.org/v24/i02/}
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#'   \url{https://www.jstatsoft.org/v24/i02/}
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#' @author Carter T. Butts \email{buttsc@uci.edu}
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#' 
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#' @seealso \code{\link{get.edgeIDs}}, \code{\link{network.extraction}}, 
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#' @seealso \code{\link{get.neighborhood}}, \code{\link{valid.eids}}
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#' @references Butts, C. T.  (2008).  \dQuote{network: a Package for Managing
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#' Relational Data in R.} \emph{Journal of Statistical Software}, 24(2).
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#' \url{http://www.jstatsoft.org/v24/i02/}
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#' \url{https://www.jstatsoft.org/v24/i02/}
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#' @keywords classes graphs
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#' @examples
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#' 
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#' @seealso \code{\link{get.edges}}, \code{\link{is.adjacent}}
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#' @references Butts, C. T.  (2008).  \dQuote{network: a Package for Managing
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#' Relational Data in R.} \emph{Journal of Statistical Software}, 24(2).
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#' \url{http://www.jstatsoft.org/v24/i02/}
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#' \url{https://www.jstatsoft.org/v24/i02/}
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#' 
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#' Wasserman, S. and Faust, K.  1994.  \emph{Social Network Analysis: Methods
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#' and Applications.} Cambridge: Cambridge University Press.
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#' \code{set.network.attribute}, \code{\link{add.edges}}
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#' @references Butts, C. T.  (2008).  \dQuote{network: a Package for Managing
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#' Relational Data in R.} \emph{Journal of Statistical Software}, 24(2).
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#' \url{http://www.jstatsoft.org/v24/i02/}
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#' \url{https://www.jstatsoft.org/v24/i02/}
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#' @keywords classes graphs
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#' @examples
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#' 
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#' \code{\link{attribute.methods}}
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#' @references Butts, C. T.  (2008).  \dQuote{network: a Package for Managing
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#' Relational Data in R.} \emph{Journal of Statistical Software}, 24(2).
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#' \url{http://www.jstatsoft.org/v24/i02/}
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#' \url{https://www.jstatsoft.org/v24/i02/}
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#' 
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#' Wasserman, S. and Faust, K.  1994.  \emph{Social Network Analysis: Methods
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#' and Applications}.  Cambridge: Cambridge University Press.
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#' \code{\link{get.network.attribute}}, \code{is.adjacent}, \code{\link{is.na}}
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#' @references Butts, C. T.  (2008).  \dQuote{network: a Package for Managing
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#' Relational Data in R.} \emph{Journal of Statistical Software}, 24(2).
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#' \url{http://www.jstatsoft.org/v24/i02/}
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#' \url{https://www.jstatsoft.org/v24/i02/}
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#' @keywords classes graphs
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#' @examples
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#' 
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#' \code{\link{network.indicators}}, \code{\link{plot.network}}
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#' @references Butts, C. T.  (2008).  \dQuote{network: a Package for Managing
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#' Relational Data in R.} \emph{Journal of Statistical Software}, 24(2).
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#' \url{http://www.jstatsoft.org/v24/i02/}
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#' \url{https://www.jstatsoft.org/v24/i02/}
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#' @keywords classes graphs
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#' @examples
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#' 
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#' \code{\link{network.edgecount}}, \code{\link{is.directed}}
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#' @references Butts, C. T.  (2008).  \dQuote{network: a Package for Managing
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#' Relational Data in R.} \emph{Journal of Statistical Software}, 24(2).
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#' \url{http://www.jstatsoft.org/v24/i02/}
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#' \url{https://www.jstatsoft.org/v24/i02/}
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#' @keywords classes graphs
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#' @examples
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#' 
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#' @seealso \code{\link{get.network.attribute}}
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#' @references Butts, C. T.  (2008).  \dQuote{network: a Package for Managing
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#' Relational Data in R.} \emph{Journal of Statistical Software}, 24(2).
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#' \url{http://www.jstatsoft.org/v24/i02/}
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#' \url{https://www.jstatsoft.org/v24/i02/}
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#' @keywords classes graphs
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#' @examples
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#' 
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#' @seealso \code{\link{get.network.attribute}}
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#' @references Butts, C. T.  (2008).  \dQuote{network: a Package for Managing
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#' Relational Data in R.} \emph{Journal of Statistical Software}, 24(2).
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#' \url{http://www.jstatsoft.org/v24/i02/}
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#' \url{https://www.jstatsoft.org/v24/i02/}
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#' @keywords classes graphs
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#' @examples
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#' 
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#' @seealso \code{\link{network}}
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#' @references Butts, C. T.  (2008).  \dQuote{network: a Package for Managing
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#' Relational Data in R.} \emph{Journal of Statistical Software}, 24(2).
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#' \url{http://www.jstatsoft.org/v24/i02/}
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#' \url{https://www.jstatsoft.org/v24/i02/}
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#' @keywords manip graphs
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#' @examples
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#' 

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# David Hunter <dhunter@stat.psu.edu> and Mark S. Handcock
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# <handcock@u.washington.edu>.
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#
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# Last Modified 01/28/11
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# Last Modified 06/06/21
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# Licensed under the GNU General Public License version 2 (June, 1991)
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# or greater
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#
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#' \code{\link{network.operators}}, and \code{\link{get.inducedSubgraph}}
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#' @references Butts, C. T.  (2008).  \dQuote{network: a Package for Managing
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#' Relational Data in R.} \emph{Journal of Statistical Software}, 24(2).
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#' \url{http://www.jstatsoft.org/v24/i02/}
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#' \url{https://www.jstatsoft.org/v24/i02/}
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#' @keywords graphs manip
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#' @examples
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#' 
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#' @seealso \code{\link{network.extraction}}
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#' @references Butts, C. T.  (2008).  \dQuote{network: a Package for Managing
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#' Relational Data in R.} \emph{Journal of Statistical Software}, 24(2).
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#' \url{http://www.jstatsoft.org/v24/i02/}
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#' \url{https://www.jstatsoft.org/v24/i02/}
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#' 
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#' Wasserman, S. and Faust, K.  (1994).  \emph{Social Network Analysis: Methods
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#' and Applications.} Cambridge: University of Cambridge Press.
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#' @seealso \code{\link{network.operators}}
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#' @references Butts, C. T.  (2008).  \dQuote{network: a Package for Managing
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#' Relational Data in R.} \emph{Journal of Statistical Software}, 24(2).
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#' \url{http://www.jstatsoft.org/v24/i02/}
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#' \url{https://www.jstatsoft.org/v24/i02/}
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#' @keywords arith graphs
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#' @examples
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#' 
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#' @seealso \code{\link{network.operators}}
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#' @references Butts, C. T.  (2008).  \dQuote{network: a Package for Managing
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#' Relational Data in R.} \emph{Journal of Statistical Software}, 24(2).
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#' \url{http://www.jstatsoft.org/v24/i02/}
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#' \url{https://www.jstatsoft.org/v24/i02/}
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#' @keywords arith graphs
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#' @examples
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#' 

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# David Hunter <dhunter@stat.psu.edu> and Mark S. Handcock
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# <handcock@u.washington.edu>.
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#
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# Last Modified 11/24/19
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# Last Modified 06/06/21
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# Licensed under the GNU General Public License version 2 (June, 1991)
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# or greater
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#
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#' \code{\link{polygon}}
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#' @references Butts, C. T.  (2008).  \dQuote{network: a Package for Managing
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#' Relational Data in R.} \emph{Journal of Statistical Software}, 24(2).
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#' \url{http://www.jstatsoft.org/v24/i02/}
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#' \url{https://www.jstatsoft.org/v24/i02/}
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#' @keywords aplot graphs
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#' @examples
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#' 
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#' @seealso \code{\link{plot.network}}, \code{\link{polygon}}
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#' @references Butts, C. T.  (2008).  \dQuote{network: a Package for Managing
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#' Relational Data in R.} \emph{Journal of Statistical Software}, 24(2).
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#' \url{http://www.jstatsoft.org/v24/i02/}
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#' \url{https://www.jstatsoft.org/v24/i02/}
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#' @keywords aplot graphs
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#' @examples
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#' 
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#' \code{\link{network.loop}}, \code{\link{network.vertex}}
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#' @references Butts, C. T.  (2008).  \dQuote{network: a Package for Managing
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#' Relational Data in R.} \emph{Journal of Statistical Software}, 24(2).
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#' \url{http://www.jstatsoft.org/v24/i02/}
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#' \url{https://www.jstatsoft.org/v24/i02/}
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#' 
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#' Wasserman, S., and Faust, K.  (1994).  \emph{Social Network Analysis:
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#' Methods and Applications.} Cambridge: Cambridge University Press.

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# David Hunter <dhunter@stat.psu.edu> and Mark S. Handcock
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# <handcock@u.washington.edu>.
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#
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# Last Modified 02/26/13
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# Last Modified 06/06/21
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# Licensed under the GNU General Public License version 2 (June, 1991)
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#
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#' @seealso \code{\link{network.edgecount}}, \code{\link{network.size}}
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#' @references Butts, C. T.  (2008).  \dQuote{network: a Package for Managing
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#' Relational Data in R.} \emph{Journal of Statistical Software}, 24(2).
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#' \url{http://www.jstatsoft.org/v24/i02/}
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#' \url{https://www.jstatsoft.org/v24/i02/}
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#' 
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#' Wasserman, S. and Faust, K.  (1994).  \emph{Social Network Analysis: Methods
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#' and Applications.} Cambridge: Cambridge University Press.
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#' @seealso \code{\link{as.matrix.network}}, \code{\link{as.network.matrix}}
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#' @references Butts, C. T.  (2008).  \dQuote{network: a Package for Managing
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#' Relational Data in R.} \emph{Journal of Statistical Software}, 24(2).
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#' \url{http://www.jstatsoft.org/v24/i02/}
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#' \url{https://www.jstatsoft.org/v24/i02/}
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#' @keywords graphs
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#' @examples
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#' 

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# David Hunter <dhunter@stat.psu.edu> and Mark S. Handcock
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# <handcock@u.washington.edu>.
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#
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# Last Modified 03/4/13
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# Last Modified 06/06/21
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# Licensed under the GNU General Public License version 2 (June, 1991)
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#
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#' @seealso \code{\link{plot.network}}
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#' @references Butts, C. T.  (2008).  \dQuote{network: a Package for Managing
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#' Relational Data in R.} \emph{Journal of Statistical Software}, 24(2).
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#' \url{http://www.jstatsoft.org/v24/i02/}
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#' \url{https://www.jstatsoft.org/v24/i02/}
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#' 
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#' Fruchterman, T.M.J. and Reingold, E.M.  (1991).  \dQuote{Graph Drawing by
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#' Force-directed Placement.} \emph{Software - Practice and Experience,}
Files Coverage
R 71.67%
src 71.73%
Project Totals (18 files) 71.69%
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comment: false
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coverage:
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  status:
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    project:
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      default:
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        target: auto
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        threshold: 1%
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        informational: true
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    patch:
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      default:
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        target: auto
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        threshold: 1%
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        informational: true
Sunburst
The inner-most circle is the entire project, moving away from the center are folders then, finally, a single file. The size and color of each slice is representing the number of statements and the coverage, respectively.
Icicle
The top section represents the entire project. Proceeding with folders and finally individual files. The size and color of each slice is representing the number of statements and the coverage, respectively.
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Each block represents a single file in the project. The size and color of each block is represented by the number of statements and the coverage, respectively.
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