Compare ⋅ rohitsanj/doex

Overview Diff Coverage Changes Files Commits

Flags

Flags have been temporarily removed from this view while the flagging feature is refactored for better performance and user experience.

You can still use flags when viewing individual files. Flag-level thresholds will also remain on pull and merge requests in your repository provider.

More information can be found in our documentation.

Showing 2 of 4 files from the diff.

100.00% 100.00% ø

doex/rcbd.py changed.

100.00% 100.00% ø

doex/latin_square.py changed.

Other files ignored by Codecov

doex/tests/test_latin_square.py has changed.

doex/tests/test_rcbd.py has changed.

@@ -9,6 +9,11 @@

Loading


        n_treatments, n_blocks = self.data.shape

        if hasattr(self, "num_missing"):
            num_missing = self.num_missing
        else:
            num_missing = 0

        N = 0
        for entry in self.data:
            N += len(entry)

@@ -32,7 +37,7 @@

Loading

        self.dof_treatments = n_treatments - 1
        self.dof_blocks = n_blocks - 1
        self.dof_total = N - 1
        self.dof_error = self.dof_total - (self.dof_treatments + self.dof_blocks)
        self.dof_error = self.dof_total - (self.dof_treatments + self.dof_blocks + num_missing)

        # Calculate Mean Sum of Squares
        self.mss_treatments = self.ss_treatments / self.dof_treatments

@@ -101,11 +106,11 @@

Loading


        n_treatments, n_blocks = self.data.shape

        num_missing = np.count_nonzero(np.isnan(self.data))
        self.num_missing = np.count_nonzero(np.isnan(self.data))
        missing_locations = np.argwhere(np.isnan(self.data))
        self.handle_missing(self.data, missing_locations)

        print("Data after adjusting for {} missing value(s)".format(num_missing))
        print("Data after adjusting for {} missing value(s)".format(self.num_missing))
        print(self.data)

        # Continue with RCBD analysis

@@ -65,7 +65,9 @@

Loading

        self.dof_columns = n_cols - 1
        self.dof_treatments = len(self.treatments) - 1
        self.dof_total = N - 1
        self.dof_error = self.dof_total - (self.dof_rows + self.dof_columns + self.dof_treatments)
        self.dof_error = self.dof_total - (
            self.dof_rows + self.dof_columns + self.dof_treatments + num_missing
        )

        # Calculate Mean Sum of Squares
        self.mss_rows = self.ss_rows / self.dof_rows

Everything is accounted for!

No changes detected that need to be reviewed.

What changes does Codecov check for?

Lines, not adjusted in diff, that have changed coverage data.

Files that introduced coverage data that had none before.

Files that have missing coverage data that once were tracked.

100.00% 100.00% ø

Merge pull request #16 from rohitsanj/hotfix-dof-error

rohitsanj

41a7921

CI Passed

100.00% 100.00% ø

Merge branch 'master' into hotfix-dof-error

rohitsanj

1bc8fb2

CI Passed

+38

100.00% 100.00% ø

fixed dof error bug with missing values

rohitsanj

15b6652

CI Passed

-35

100.00% 100.00% ø

Merge pull request #15 from rohitsanj/multiple-comparisons

rohitsanj

1ad6b4d

CI Passed

Files		•	•	•	Coverage
doex	+3	+3	ø	ø	100.00%
Project Totals (6 files)	358	358	0	0	100.00%

101	106
102	107		n_treatments, n_blocks = self.data.shape
103	108
104		-	num_missing = np.count_nonzero(np.isnan(self.data))
	109	+	self.num_missing = np.count_nonzero(np.isnan(self.data))
105	110		missing_locations = np.argwhere(np.isnan(self.data))
106	111		self.handle_missing(self.data, missing_locations)
107	112
108		-	print("Data after adjusting for {} missing value(s)".format(num_missing))
	113	+	print("Data after adjusting for {} missing value(s)".format(self.num_missing))
109	114		print(self.data)
110	115
111	116		# Continue with RCBD analysis

Navigation	Overlay
`t` Navigate files	`h` Toggle hits
`y` Change url to tip of branch	`m` Toggle misses
`b / v` Jump to prev/next hit line	`p` Toggle partial
`z / x` Jump to prev/next missed or partial line	`1..9` Toggle flags
`shift + o` Open current page in GitHub	`a` Toggle all on
`/ or ?` Show keyboard shortcuts dialog	`c` Toggle context lines or commits

Compare `1ad6b4d ... +2 ... 41a7921`

Flags

Everything is accounted for!

What changes does Codecov check for?

4 Commits

9	9
10	10		n_treatments, n_blocks = self.data.shape
11	11
	12	+	if hasattr(self, "num_missing"):
	13	+	num_missing = self.num_missing
	14	+	else:
	15	+	num_missing = 0
	16	+
12	17		N = 0
13	18		for entry in self.data:
14	19		N += len(entry)

32	37		self.dof_treatments = n_treatments - 1
33	38		self.dof_blocks = n_blocks - 1
34	39		self.dof_total = N - 1
35		-	self.dof_error = self.dof_total - (self.dof_treatments + self.dof_blocks)
	40	+	self.dof_error = self.dof_total - (self.dof_treatments + self.dof_blocks + num_missing)
36	41
37	42		# Calculate Mean Sum of Squares
38	43		self.mss_treatments = self.ss_treatments / self.dof_treatments

65	65		self.dof_columns = n_cols - 1
66	66		self.dof_treatments = len(self.treatments) - 1
67	67		self.dof_total = N - 1
68		-	self.dof_error = self.dof_total - (self.dof_rows + self.dof_columns + self.dof_treatments)
	68	+	self.dof_error = self.dof_total - (
	69	+	self.dof_rows + self.dof_columns + self.dof_treatments + num_missing
	70	+	)
69	71
70	72		# Calculate Mean Sum of Squares
71	73		self.mss_rows = self.ss_rows / self.dof_rows

Compare 1ad6b4d ... +2 ... 41a7921

Flags

Everything is accounted for!

What changes does Codecov check for?

4 Commits

Compare `1ad6b4d ... +2 ... 41a7921`