privefl / bigsnpr
Files Coverage
R/Fst.R 93.55%
R/LDpred2.R 100.00%
R/MAX3.R 100.00%
R/PRS.R 95.35%
R/SCT.R 100.00%
R/apply-parallelize.R 100.00%
R/autoSVD.R 87.59%
R/bed-class.R 100.00%
R/bed-clumping.R 100.00%
R/bed-mult-vec.R 100.00%
R/bed-projectPCA.R 80.23%
R/bed-tcrossprodSelf.R 100.00%
R/binom-scaling.R 100.00%
R/clumping.R 81.82%
R/corr.R 100.00%
R/external-software.R 69.57%
R/fake.R 100.00%
R/get-save-infos.R 86.67%
R/impute.R 100.00%
R/lassosum2.R 100.00%
R/ld-scores.R 100.00%
R/ldsc.R 72.09%
R/man-qq-gc.R 100.00%
R/match-alleles.R 77.11%
R/pcadapt.R 100.00%
R/prod-bgen.R 94.59%
R/read-bgen.R 92.59%
R/read-plink.R 98.04%
R/simu-pheno.R 89.29%
R/split-LD.R 100.00%
R/subset-QC.R 100.00%
R/utils-assert.R 96.30%
R/utils.R 100.00%
R/write-plink.R 100.00%
src/bed-acc-xptr.cpp 76.92%
src/bed-acc.h 100.00%
src/bed-fun.cpp 100.00%
src/bed-prod-vec.cpp 100.00%
src/clumping-bed.cpp 100.00%
src/clumping-cached.cpp 100.00%
src/clumping-utils.h 100.00%
src/clumping.cpp 100.00%
src/colstats.cpp 100.00%
src/copy-subset.cpp 100.00%
src/corr.cpp 94.74%
src/fstream.h 95.00%
src/impute-simple.cpp 100.00%
src/lassosum2.cpp 100.00%
src/ld-scores-sfbm.cpp 100.00%
src/ld-scores.cpp 94.74%
src/ldpred2-auto.cpp 87.50%
src/ldpred2-sampling.cpp 96.43%
src/ldpred2.cpp 100.00%
src/multLinReg.cpp 95.00%
src/optim-MLE-alpha.h 100.00%
src/prod-bgen.cpp 91.84%
src/read-bgen.cpp 94.23%
src/read-plink.cpp 100.00%
src/sp-colsumssq-sym.cpp 100.00%
src/split-LD.cpp 100.00%
src/write-plink.cpp 100.00%
Project Totals (61 files) 91.56%
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