|
R/Id.R
|
8
|
8
|
0
|
0
|
100.00%
|
|
R/OptimizationProblem-methods.R
|
26
|
26
|
0
|
0
|
100.00%
|
|
R/add_absolute_targets.R
|
36
|
36
|
0
|
0
|
100.00%
|
|
R/add_asym_connectivity_penalties.R
|
68
|
68
|
0
|
0
|
100.00%
|
|
R/add_binary_decisions.R
|
9
|
9
|
0
|
0
|
100.00%
|
|
R/add_boundary_penalties.R
|
74
|
72
|
0
|
2
|
97.30%
|
|
R/add_cbc_solver.R
|
113
|
113
|
0
|
0
|
100.00%
|
|
R/add_connectivity_penalties.R
|
71
|
71
|
0
|
0
|
100.00%
|
|
R/add_contiguity_constraints.R
|
59
|
59
|
0
|
0
|
100.00%
|
|
R/add_cuts_portfolio.R
|
26
|
25
|
0
|
1
|
96.15%
|
|
R/add_default_decisions.R
|
1
|
1
|
0
|
0
|
100.00%
|
|
R/add_default_objective.R
|
2
|
2
|
0
|
0
|
100.00%
|
|
R/add_default_portfolio.R
|
1
|
1
|
0
|
0
|
100.00%
|
|
R/add_feature_contiguity_constraints.R
|
86
|
79
|
0
|
7
|
91.86%
|
|
R/add_feature_weights.R
|
46
|
46
|
0
|
0
|
100.00%
|
|
R/add_linear_constraints.R
|
110
|
99
|
0
|
11
|
90.00%
|
|
R/add_linear_penalties.R
|
87
|
79
|
0
|
8
|
90.80%
|
|
R/add_locked_in_constraints.R
|
76
|
76
|
0
|
0
|
100.00%
|
|
R/add_locked_out_constraints.R
|
73
|
73
|
0
|
0
|
100.00%
|
|
R/add_loglinear_targets.R
|
40
|
40
|
0
|
0
|
100.00%
|
|
R/add_lpsymphony_solver.R
|
79
|
79
|
0
|
0
|
100.00%
|
|
R/add_mandatory_allocation_constraints.R
|
14
|
14
|
0
|
0
|
100.00%
|
|
R/add_manual_bounded_constraints.R
|
63
|
62
|
0
|
1
|
98.41%
|
|
R/add_manual_locked_constraints.R
|
69
|
67
|
0
|
2
|
97.10%
|
|
R/add_manual_targets.R
|
75
|
75
|
0
|
0
|
100.00%
|
|
R/add_max_cover_objective.R
|
25
|
25
|
0
|
0
|
100.00%
|
|
R/add_max_features_objective.R
|
26
|
26
|
0
|
0
|
100.00%
|
|
R/add_max_phylo_div_objective.R
|
40
|
39
|
0
|
1
|
97.50%
|
|
R/add_max_phylo_end_objective.R
|
47
|
46
|
0
|
1
|
97.87%
|
|
R/add_max_utility_objective.R
|
26
|
26
|
0
|
0
|
100.00%
|
|
R/add_min_largest_shortfall_objective.R
|
27
|
27
|
0
|
0
|
100.00%
|
|
R/add_min_set_objective.R
|
10
|
10
|
0
|
0
|
100.00%
|
|
R/add_min_shortfall_objective.R
|
26
|
26
|
0
|
0
|
100.00%
|
|
R/add_neighbor_constraints.R
|
99
|
99
|
0
|
0
|
100.00%
|
|
R/add_proportion_decisions.R
|
9
|
9
|
0
|
0
|
100.00%
|
|
R/add_relative_targets.R
|
35
|
35
|
0
|
0
|
100.00%
|
|
R/add_rsymphony_solver.R
|
78
|
78
|
0
|
0
|
100.00%
|
|
R/add_semicontinuous_decisions.R
|
14
|
14
|
0
|
0
|
100.00%
|
|
R/add_shuffle_portfolio.R
|
52
|
51
|
0
|
1
|
98.08%
|
|
R/adjacency_matrix.R
|
33
|
31
|
0
|
2
|
93.94%
|
|
R/binary_stack.R
|
11
|
11
|
0
|
0
|
100.00%
|
|
R/boundary_matrix.R
|
60
|
60
|
0
|
0
|
100.00%
|
|
R/branch_matrix.R
|
7
|
7
|
0
|
0
|
100.00%
|
|
R/category_layer.R
|
9
|
9
|
0
|
0
|
100.00%
|
|
R/category_vector.R
|
18
|
18
|
0
|
0
|
100.00%
|
|
R/compile.R
|
60
|
59
|
0
|
1
|
98.33%
|
|
R/connectivity_matrix.R
|
40
|
40
|
0
|
0
|
100.00%
|
|
R/distribute_load.R
|
13
|
13
|
0
|
0
|
100.00%
|
|
R/eval_asym_connectivity_summary.R
|
67
|
65
|
0
|
2
|
97.01%
|
|
R/eval_boundary_summary.R
|
31
|
30
|
0
|
1
|
96.77%
|
|
R/eval_connectivity_summary.R
|
66
|
64
|
0
|
2
|
96.97%
|
|
R/eval_cost_summary.R
|
13
|
12
|
0
|
1
|
92.31%
|
|
R/eval_feature_representation_summary.R
|
44
|
44
|
0
|
0
|
100.00%
|
|
R/eval_ferrier_importance.R
|
113
|
113
|
0
|
0
|
100.00%
|
|
R/eval_n_summary.R
|
12
|
12
|
0
|
0
|
100.00%
|
|
R/eval_rare_richness_importance.R
|
102
|
102
|
0
|
0
|
100.00%
|
|
R/eval_replacement_importance.R
|
171
|
166
|
0
|
5
|
97.08%
|
|
R/eval_target_coverage_summary.R
|
59
|
55
|
0
|
4
|
93.22%
|
|
R/fast_extract.R
|
42
|
42
|
0
|
0
|
100.00%
|
|
R/feature_abundances.R
|
14
|
14
|
0
|
0
|
100.00%
|
|
R/feature_names.R
|
4
|
4
|
0
|
0
|
100.00%
|
|
R/internal.R
|
68
|
68
|
0
|
0
|
100.00%
|
|
R/intersecting_units.R
|
49
|
49
|
0
|
0
|
100.00%
|
|
R/loglinear_interpolation.R
|
15
|
15
|
0
|
0
|
100.00%
|
|
R/marxan_boundary_data_to_matrix.R
|
1
|
1
|
0
|
0
|
100.00%
|
|
R/marxan_connectivity_data_to_matrix.R
|
76
|
73
|
0
|
3
|
96.05%
|
|
R/marxan_problem.R
|
143
|
140
|
0
|
3
|
97.90%
|
|
R/misc.R
|
6
|
6
|
0
|
0
|
100.00%
|
|
R/new_optimization_problem.R
|
1
|
1
|
0
|
0
|
100.00%
|
|
R/number_of_features.R
|
5
|
5
|
0
|
0
|
100.00%
|
|
R/number_of_planning_units.R
|
3
|
3
|
0
|
0
|
100.00%
|
|
R/number_of_total_units.R
|
2
|
2
|
0
|
0
|
100.00%
|
|
R/number_of_zones.R
|
5
|
5
|
0
|
0
|
100.00%
|
|
R/parameters.R
|
107
|
107
|
0
|
0
|
100.00%
|
|
R/planning_unit_solution_status.R
|
228
|
224
|
0
|
4
|
98.25%
|
|
R/pproto.R
|
20
|
20
|
0
|
0
|
100.00%
|
|
R/predefined_optimization_problem.R
|
30
|
30
|
0
|
0
|
100.00%
|
|
R/presolve_check.R
|
138
|
138
|
0
|
0
|
100.00%
|
|
R/problem.R
|
408
|
402
|
0
|
6
|
98.53%
|
|
R/proximity_matrix.R
|
35
|
35
|
0
|
0
|
100.00%
|
|
R/rij_matrix.R
|
31
|
31
|
0
|
0
|
100.00%
|
|
R/run_calculations.R
|
10
|
9
|
0
|
1
|
90.00%
|
|
R/simulate.R
|
41
|
41
|
0
|
0
|
100.00%
|
|
R/solve.R
|
84
|
83
|
0
|
1
|
98.81%
|
|
R/targets.R
|
2
|
2
|
0
|
0
|
100.00%
|
|
R/tbl_df.R
|
3
|
3
|
0
|
0
|
100.00%
|
|
R/waiver.R
|
1
|
1
|
0
|
0
|
100.00%
|
|
R/write_problem.R
|
31
|
31
|
0
|
0
|
100.00%
|
|
R/zone_names.R
|
4
|
4
|
0
|
0
|
100.00%
|
|
R/zones.R
|
59
|
59
|
0
|
0
|
100.00%
|
|
src/functions.cpp
|
21
|
21
|
0
|
0
|
100.00%
|
|
src/functions.h
|
4
|
4
|
0
|
0
|
100.00%
|
|
src/init.c
|
3
|
3
|
0
|
0
|
100.00%
|
|
src/optimization_problem.cpp
|
109
|
109
|
0
|
0
|
100.00%
|
|
src/optimization_problem.h
|
26
|
26
|
0
|
0
|
100.00%
|
|
src/rcpp_absolute_amount_held_by_solution.cpp
|
26
|
26
|
0
|
0
|
100.00%
|
|
src/rcpp_add_linear_constraints.cpp
|
12
|
12
|
0
|
0
|
100.00%
|
|
src/rcpp_add_rij_data.cpp
|
74
|
74
|
0
|
0
|
100.00%
|
|
src/rcpp_add_zones_constraints.cpp
|
14
|
14
|
0
|
0
|
100.00%
|
|
src/rcpp_apply_asym_connectivity_penalties.cpp
|
96
|
96
|
0
|
0
|
100.00%
|
|
src/rcpp_apply_boundary_penalties.cpp
|
104
|
103
|
0
|
1
|
99.04%
|
|
src/rcpp_apply_bounded_constraints.cpp
|
8
|
8
|
0
|
0
|
100.00%
|
|
src/rcpp_apply_connectivity_penalties.cpp
|
92
|
92
|
0
|
0
|
100.00%
|
|
src/rcpp_apply_contiguity_constraints.cpp
|
113
|
113
|
0
|
0
|
100.00%
|
|
src/rcpp_apply_decisions.cpp
|
13
|
13
|
0
|
0
|
100.00%
|
|
src/rcpp_apply_feature_contiguity_constraints.cpp
|
141
|
140
|
0
|
1
|
99.29%
|
|
src/rcpp_apply_feature_weights.cpp
|
11
|
11
|
0
|
0
|
100.00%
|
|
src/rcpp_apply_linear_penalties.cpp
|
19
|
17
|
0
|
2
|
89.47%
|
|
src/rcpp_apply_locked_constraints.cpp
|
8
|
8
|
0
|
0
|
100.00%
|
|
src/rcpp_apply_max_cover_objective.cpp
|
78
|
78
|
0
|
0
|
100.00%
|
|
src/rcpp_apply_max_features_objective.cpp
|
67
|
67
|
0
|
0
|
100.00%
|
|
src/rcpp_apply_max_phylo_objective.cpp
|
103
|
103
|
0
|
0
|
100.00%
|
|
src/rcpp_apply_max_utility_objective.cpp
|
78
|
78
|
0
|
0
|
100.00%
|
|
src/rcpp_apply_min_largest_shortfall_objective.cpp
|
94
|
94
|
0
|
0
|
100.00%
|
|
src/rcpp_apply_min_set_objective.cpp
|
24
|
24
|
0
|
0
|
100.00%
|
|
src/rcpp_apply_min_shortfall_objective.cpp
|
66
|
66
|
0
|
0
|
100.00%
|
|
src/rcpp_apply_neighbor_constraints.cpp
|
40
|
40
|
0
|
0
|
100.00%
|
|
src/rcpp_asym_connectivity.cpp
|
17
|
17
|
0
|
0
|
100.00%
|
|
src/rcpp_boundary.cpp
|
34
|
34
|
0
|
0
|
100.00%
|
|
src/rcpp_boundary_data.cpp
|
128
|
112
|
0
|
16
|
87.50%
|
|
src/rcpp_boundary_data.h
|
47
|
45
|
0
|
2
|
95.74%
|
|
src/rcpp_branch_matrix.cpp
|
28
|
28
|
0
|
0
|
100.00%
|
|
src/rcpp_connectivity.cpp
|
16
|
16
|
0
|
0
|
100.00%
|
|
src/rcpp_ferrier_score.cpp
|
93
|
82
|
0
|
11
|
88.17%
|
|
src/rcpp_forbid_solution.cpp
|
18
|
18
|
0
|
0
|
100.00%
|
|
src/rcpp_list_to_matrix_indices.cpp
|
19
|
19
|
0
|
0
|
100.00%
|
|
src/rcpp_sp_to_polyset.cpp
|
38
|
38
|
0
|
0
|
100.00%
|
|
src/rcpp_str_tree_to_sparse_matrix.cpp
|
24
|
0
|
0
|
24
|
0.00%
|
|
src/rcpp_summarize_exactextractr.cpp
|
28
|
27
|
0
|
1
|
96.43%
|
jeffreyhanson