R/problem.R
R/planning_unit_solution_status.R
R/eval_replacement_importance.R
R/marxan_problem.R
R/presolve_check.R
R/add_cbc_solver.R
R/eval_ferrier_importance.R
R/add_linear_constraints.R
R/parameters.R
R/eval_rare_richness_importance.R
R/add_neighbor_constraints.R
R/add_linear_penalties.R
R/add_feature_contiguity_constraints.R
R/solve.R
R/add_lpsymphony_solver.R
R/add_rsymphony_solver.R
R/add_locked_in_constraints.R
R/marxan_connectivity_data_to_matrix.R
R/add_manual_targets.R
R/add_boundary_penalties.R
R/add_locked_out_constraints.R
R/add_connectivity_penalties.R
R/add_manual_locked_constraints.R
R/internal.R
R/add_asym_connectivity_penalties.R
R/eval_asym_connectivity_summary.R
R/eval_connectivity_summary.R
R/add_manual_bounded_constraints.R
R/compile.R
R/boundary_matrix.R
R/zones.R
R/add_contiguity_constraints.R
R/eval_target_coverage_summary.R
R/add_shuffle_portfolio.R
R/intersecting_units.R
R/add_max_phylo_end_objective.R
R/add_feature_weights.R
R/eval_feature_representation_summary.R
R/fast_extract.R
R/simulate.R
R/connectivity_matrix.R
R/add_loglinear_targets.R
R/add_max_phylo_div_objective.R
R/add_absolute_targets.R
R/proximity_matrix.R
R/add_relative_targets.R
R/adjacency_matrix.R
R/rij_matrix.R
R/write_problem.R
R/eval_boundary_summary.R
R/predefined_optimization_problem.R
R/add_min_largest_shortfall_objective.R
R/add_cuts_portfolio.R
R/add_max_utility_objective.R
R/add_max_features_objective.R
R/OptimizationProblem-methods.R
R/add_min_shortfall_objective.R
R/add_max_cover_objective.R
R/pproto.R
R/category_vector.R
R/loglinear_interpolation.R
R/feature_abundances.R
R/add_semicontinuous_decisions.R
R/add_mandatory_allocation_constraints.R
R/distribute_load.R
R/eval_cost_summary.R
R/eval_n_summary.R
R/binary_stack.R
R/run_calculations.R
R/add_min_set_objective.R
R/category_layer.R
R/add_binary_decisions.R
R/add_proportion_decisions.R
R/Id.R
R/branch_matrix.R
R/misc.R
R/number_of_zones.R
R/number_of_features.R
R/zone_names.R
R/feature_names.R
R/tbl_df.R
R/number_of_planning_units.R
R/targets.R
R/add_default_objective.R
R/number_of_total_units.R
R/waiver.R
R/add_default_decisions.R
R/add_default_portfolio.R
R/new_optimization_problem.R
R/marxan_boundary_data_to_matrix.R
src/rcpp_apply_feature_contiguity_constraints.cpp
src/rcpp_boundary_data.cpp
src/rcpp_apply_contiguity_constraints.cpp
src/optimization_problem.cpp
src/rcpp_apply_boundary_penalties.cpp
src/rcpp_apply_max_phylo_objective.cpp
src/rcpp_apply_asym_connectivity_penalties.cpp
src/rcpp_apply_min_largest_shortfall_objective.cpp
src/rcpp_ferrier_score.cpp
src/rcpp_apply_connectivity_penalties.cpp
src/rcpp_apply_max_cover_objective.cpp
src/rcpp_apply_max_utility_objective.cpp
src/rcpp_add_rij_data.cpp
src/rcpp_apply_max_features_objective.cpp
src/rcpp_apply_min_shortfall_objective.cpp
src/rcpp_boundary_data.h
src/rcpp_apply_neighbor_constraints.cpp
src/rcpp_sp_to_polyset.cpp
src/rcpp_boundary.cpp
src/rcpp_branch_matrix.cpp
src/rcpp_summarize_exactextractr.cpp
src/optimization_problem.h
src/rcpp_absolute_amount_held_by_solution.cpp
src/rcpp_apply_min_set_objective.cpp
src/functions.cpp
src/rcpp_apply_linear_penalties.cpp
src/rcpp_list_to_matrix_indices.cpp
src/rcpp_forbid_solution.cpp
src/rcpp_connectivity.cpp
src/rcpp_asym_connectivity.cpp
src/rcpp_add_zones_constraints.cpp
src/rcpp_apply_decisions.cpp
src/rcpp_add_linear_constraints.cpp
src/rcpp_apply_feature_weights.cpp
src/rcpp_apply_locked_constraints.cpp
src/rcpp_apply_bounded_constraints.cpp
src/functions.h
src/init.c