Commit ⋅ mrcieu/ieugwasr

Showing 1 of 5 files from the diff.

77.34% 100.00% -0.92%

R/query.R changed.

Other files ignored by Codecov

man/batch_from_id.Rd is new.

tests/testthat/test_query.r has changed.

NAMESPACE has changed.

man/editcheck.Rd has changed.

@@ -177,13 +177,17 @@

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	dplyr::glimpse(x)
}

batch <- function(x) UseMethod("batch", x)
batch.GwasInfo <- function(x)
#' Extract batch name from study ID
#'
#' @param id Array of study IDs
#'
#' @export
#' @return Array of batch names
batch_from_id <- function(id)
{
	sapply(strsplit(x[["id"]], "-"), function(x) paste(x[1], x[2], sep="-"))
	sapply(strsplit(id, "-"), function(x) paste(x[1], x[2], sep="-"))
}


#' Get list of data batches in IEU GWAS database
#'
#'

@@ -320,10 +324,10 @@

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#' Check datasets that are in process of being uploaded
#'
#' @param id ID
#' @param access_token=check_access_token() <what param does>
#' @param access_token Google OAuth2 access token. Used to authenticate level of access to data. By default, checks if already authenticated through \code{get_access_token} and if not then does not perform authentication
#'
#' @export
#' @return
#' @return Dataframe
editcheck <- function(id, access_token=check_access_token())
{
	api <- options()[["ieugwasr_api"]]

Files		•	•	•	Coverage
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Project Totals (7 files)	362	225	0	137	62.15%

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177	177		dplyr::glimpse(x)
178	178		}
179	179
180		-	batch <- function(x) UseMethod("batch", x)
181		-	batch.GwasInfo <- function(x)
	180	+	#' Extract batch name from study ID
	181	+	#'
	182	+	#' @param id Array of study IDs
	183	+	#'
	184	+	#' @export
	185	+	#' @return Array of batch names
	186	+	batch_from_id <- function(id)
182	187		{
183		-	sapply(strsplit(x[["id"]], "-"), function(x) paste(x[1], x[2], sep="-"))
	188	+	sapply(strsplit(id, "-"), function(x) paste(x[1], x[2], sep="-"))
184	189		}
185	190
186		-
187	191		#' Get list of data batches in IEU GWAS database
188	192		#'
189	193		#'

320	324		#' Check datasets that are in process of being uploaded
321	325		#'
322	326		#' @param id ID
323		-	#' @param access_token=check_access_token() <what param does>
	327	+	#' @param access_token Google OAuth2 access token. Used to authenticate level of access to data. By default, checks if already authenticated through \code{get_access_token} and if not then does not perform authentication
324	328		#'
325	329		#' @export
326		-	#' @return
	330	+	#' @return Dataframe
327	331		editcheck <- function(id, access_token=check_access_token())
328	332		{
329	333		api <- options()[["ieugwasr_api"]]

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