mmollina / MAPpoly
70.32% 3.85% -0.72%

Development of fast rf for grouping

Marcelo Mollinari mmollina CI Passed

d9f81d1 fast_rf_estimation 65b5957

R
Files Coverage
cache_twopts.R 57.50%
calc_genoprob.R 82.22%
calc_genoprob_dist.R 81.54%
calc_genoprob_error.R 92.68%
check_phase_configurations.R 75.89%
eliminate_redundant.R 52.00%
est_map_hmm.R 82.24%
export_map_list.R 87.50%
filters.R 48.86%
get_counts.R 77.14%
get_counts_from_web.R 50.00%
get_submap.R 66.67%
group.R 45.88%
haplotype_map_utils.R 78.80%
homolog_probs.R 72.50%
import_from_polymapR.R 0.00%
import_from_updog.R 0.00%
loglike_hmm.R 90.48%
make_mat.R 80.00%
make_pairs.R 78.57%
make_seq.R 27.84%
marker_info.R 96.30%
mds.R 45.53%
merge_maps.R 95.77%
pairwise_rf.R 57.76%
plot_genome_vs_map.R 78.57%
plot_map_list.R 90.48%
poly_cross_simulate.R 93.10%
preferential_pairing.R 63.89%
prior_dist_hmm.R 95.24%
read_fitpoly.R 65.64%
read_mappoly.R 74.90%
read_mappoly_csv.R 96.51%
read_mappoly_prob.R 71.25%
read_mappoly_vcf.R 68.84%
reestimate_map.R 70.37%
reestimate_map_with_global_genotypic_error.R 84.27%
reestimate_map_with_prior_genotypic_probability.R 69.23%
rf_list_to_matrix.R 48.91%
rf_snp_filter.R 92.00%
segreg_poly.R 92.86%
sim_homologous.R 94.87%
simulation_utils.R 65.56%
single_map_hmm.R 92.86%
split_and_rephase.R 70.83%
utils.R 76.03%
zzz.R 100.00%
Folder Totals (47 files) 69.07%
Project Totals (59 files) 70.32%
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