mmollina / MAPpoly
Showing 1 of 4 files from the diff.
Newly tracked file
R/pairwise_rf.R changed.
Other files ignored by Codecov

@@ -9,7 +9,10 @@
Loading
9 9
#' @param count.cache an object of class \code{cache.info} containing
10 10
#'     pre-computed genotype frequencies, obtained with
11 11
#'     \code{\link[mappoly]{cache_counts_twopt}}. If \code{NULL} (default),
12 -
#'     genotype frequencies are internally loaded.   
12 +
#'     genotype frequencies are internally loaded.
13 +
#'        
14 +
#' @param count.matrix similar to \code{count.cache}, but in matrix format. 
15 +
#' Mostly for internal use.
13 16
#'
14 17
#' @param ncpus Number of parallel processes (cores) to spawn (default = 1)
15 18
#'
@@ -82,7 +85,8 @@
Loading
82 85
#' @importFrom Rcpp sourceCpp
83 86
#' @importFrom reshape2 melt acast
84 87
#' @importFrom dplyr filter arrange
85 -
est_pairwise_rf <- function(input.seq, count.cache = NULL, count.matrix = NULL, ncpus = 1L,
88 +
est_pairwise_rf <- function(input.seq, count.cache = NULL, 
89 +
                            count.matrix = NULL, ncpus = 1L,
86 90
                            mrk.pairs = NULL, n.batches = 1L,
87 91
                            est.type = c("disc","prob"),
88 92
                            verbose = TRUE, memory.warning = TRUE, 
@@ -642,6 +646,7 @@
Loading
642 646
#'
643 647
#' @param void internal function to be documented
644 648
#' @keywords internal
649 +
#' @importFrom RcppParallel RcppParallelLibs
645 650
#' @export
646 651
paralell_pairwise_discrete_rcpp <- function(mrk.pairs,
647 652
                                            m,
Files Coverage
R 68.30%
src 68.42%
Project Totals (60 files) 68.33%
Sunburst
The inner-most circle is the entire project, moving away from the center are folders then, finally, a single file. The size and color of each slice is representing the number of statements and the coverage, respectively.
Icicle
The top section represents the entire project. Proceeding with folders and finally individual files. The size and color of each slice is representing the number of statements and the coverage, respectively.
Grid
Each block represents a single file in the project. The size and color of each block is represented by the number of statements and the coverage, respectively.
Loading