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R/prefilter.R
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.github/workflows/check-full.yaml
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@@ -110,9 +110,10 @@
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| 110 | 110 | ## add GL error columns, if missing |
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| 111 | 111 | if((ncol(d) != 10 & !inherits(d, "sf")) | (ncol(d) != 9 & inherits(d, "sf"))) { |
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| 112 | 112 | d <- d %>% |
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| 113 | - | mutate(lonerr = NA, laterr = NA) |
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| 113 | + | mutate(lonerr = ifelse(lc == "GL", 5, NA), |
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| 114 | + | laterr = ifelse(lc == "GL", 5, NA)) |
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| 114 | 115 | } |
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| 115 | - | ||
| 116 | + | ||
| 116 | 117 | ## convert dates to POSIXt |
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| 117 | 118 | ## order records by time, |
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| 118 | 119 | ## flag any duplicate date records, |
@@ -127,7 +128,7 @@
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| 127 | 128 | mutate(obs.type = ifelse(lc %in% c(3,2,1,0,"A","B","Z") & (is.na(smaj) | is.na(smin) |is.na(eor)), "LS", obs.type)) %>% |
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| 128 | 129 | mutate(obs.type = ifelse(lc == "G" & (is.na(smaj) | is.na(smin) |is.na(eor)), "GPS", obs.type)) %>% |
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| 129 | 130 | mutate(obs.type = ifelse(lc == "GL" & (is.na(smaj) | is.na(smin) |is.na(eor)) & (!is.na(lonerr) & !is.na(laterr)), "GLS", obs.type)) |
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| 130 | - | ||
| 131 | + | ||
| 131 | 132 | ||
| 132 | 133 | ## if any records with smaj/smin = 0 then set to NA and obs.type to "LS" |
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| 133 | 134 | ## convert error ellipse smaj & smin from m to km and eor from deg to rad |
3
Commits
| Files | Coverage |
|---|---|
| emf.R | 72.73% |
| fit_mpm.R | 46.30% |
| fit_ssm.R | 67.21% |
| fmap.R | 62.23% |
| grab.R | 90.29% |
| join.R | 100.00% |
| mpm_control.R | 91.18% |
| mpmf.R | 88.60% |
| osar.r | 62.30% |
| plot.fG_mpm.R | 87.01% |
| plot.fG_osar.R | 90.20% |
| plot.fG_sim.R | 49.43% |
| plot.fG_simfit.R | 100.00% |
| plot.fG_ssm.R | 89.42% |
| prefilter.R | 0.14% 79.73% |
| rtnorm.R | 100.00% |
| sfilter.R | 86.02% |
| sim.R | 91.14% |
| simfit.R | 66.12% |
| ssm_control.R | 91.43% |
| wrap_lon.r | 100.00% |
| Folder Totals (21 files) | 79.35% |
| Project Totals (26 files) | 79.45% |
e1753fba8bb684907b087