fepegar / torchio

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torchio/transforms/augmentation/intensity/random_labels_to_image.py torchio/transforms/augmentation/intensity/random_motion.py torchio/transforms/augmentation/intensity/random_ghosting.py torchio/transforms/augmentation/intensity/random_swap.py torchio/transforms/augmentation/intensity/random_bias_field.py torchio/transforms/augmentation/intensity/random_spike.py torchio/transforms/augmentation/intensity/random_gamma.py torchio/transforms/augmentation/intensity/random_blur.py torchio/transforms/augmentation/intensity/random_noise.py torchio/transforms/augmentation/intensity/__init__.py torchio/transforms/augmentation/spatial/random_affine.py torchio/transforms/augmentation/spatial/random_elastic_deformation.py torchio/transforms/augmentation/spatial/random_flip.py torchio/transforms/augmentation/spatial/random_anisotropy.py torchio/transforms/augmentation/spatial/__init__.py torchio/transforms/augmentation/composition.py torchio/transforms/augmentation/random_transform.py torchio/transforms/augmentation/__init__.py torchio/transforms/preprocessing/spatial/resample.py torchio/transforms/preprocessing/spatial/crop_or_pad.py torchio/transforms/preprocessing/spatial/pad.py torchio/transforms/preprocessing/spatial/crop.py torchio/transforms/preprocessing/spatial/ensure_shape_multiple.py torchio/transforms/preprocessing/spatial/to_canonical.py torchio/transforms/preprocessing/spatial/bounds_transform.py torchio/transforms/preprocessing/intensity/histogram_standardization.py torchio/transforms/preprocessing/intensity/rescale.py torchio/transforms/preprocessing/intensity/z_normalization.py torchio/transforms/preprocessing/intensity/normalization_transform.py torchio/transforms/preprocessing/intensity/__init__.py torchio/transforms/preprocessing/label/remap_labels.py torchio/transforms/preprocessing/label/one_hot.py torchio/transforms/preprocessing/label/sequential_labels.py torchio/transforms/preprocessing/label/keep_largest_component.py torchio/transforms/preprocessing/label/remove_labels.py torchio/transforms/preprocessing/label/contour.py torchio/transforms/preprocessing/label/label_transform.py torchio/transforms/preprocessing/__init__.py torchio/transforms/transform.py torchio/transforms/data_parser.py torchio/transforms/__init__.py torchio/transforms/lambda_transform.py torchio/transforms/interpolation.py torchio/transforms/intensity_transform.py torchio/transforms/fourier.py torchio/transforms/spatial_transform.py torchio/data/image.py torchio/data/io.py torchio/data/sampler/weighted.py torchio/data/sampler/label.py torchio/data/sampler/sampler.py torchio/data/sampler/uniform.py torchio/data/sampler/__init__.py torchio/data/inference/aggregator.py torchio/data/inference/grid_sampler.py torchio/data/inference/__init__.py torchio/data/subject.py torchio/data/queue.py torchio/data/dataset.py torchio/data/__init__.py torchio/datasets/mni/icbm.py torchio/datasets/mni/colin.py torchio/datasets/mni/pediatric.py torchio/datasets/mni/sheep.py torchio/datasets/mni/__init__.py torchio/datasets/mni/mni.py torchio/datasets/ixi.py torchio/datasets/episurg.py torchio/datasets/bite.py torchio/datasets/itk_snap/itk_snap.py torchio/datasets/itk_snap/__init__.py torchio/datasets/fpg.py torchio/datasets/slicer.py torchio/datasets/__init__.py torchio/utils.py torchio/visualization.py torchio/download.py torchio/cli/apply_transform.py torchio/cli/print_info.py torchio/typing.py torchio/constants.py torchio/__init__.py torchio/reference.py tests/transforms/augmentation/test_random_labels_to_image.py tests/transforms/augmentation/test_random_affine.py tests/transforms/augmentation/test_random_ghosting.py tests/transforms/augmentation/test_random_elastic_deformation.py tests/transforms/augmentation/test_random_motion.py tests/transforms/augmentation/test_random_spike.py tests/transforms/augmentation/test_random_gamma.py tests/transforms/augmentation/test_random_noise.py tests/transforms/augmentation/test_random_blur.py tests/transforms/augmentation/test_random_anisotropy.py tests/transforms/augmentation/test_random_flip.py tests/transforms/augmentation/test_random_bias_field.py tests/transforms/augmentation/test_oneof.py tests/transforms/augmentation/test_random_swap.py tests/transforms/preprocessing/test_crop_pad.py tests/transforms/preprocessing/test_rescale.py tests/transforms/preprocessing/test_resample.py tests/transforms/preprocessing/test_histogram_standardization.py tests/transforms/preprocessing/test_ensure_shape_multiple.py tests/transforms/preprocessing/test_pad.py tests/transforms/preprocessing/test_z_normalization.py tests/transforms/preprocessing/test_to_canonical.py tests/transforms/preprocessing/test_crop.py tests/transforms/test_transforms.py tests/transforms/test_invertibility.py tests/transforms/label/test_remove_labels.py tests/transforms/label/test_sequential_labels.py tests/transforms/label/test_remap_labels.py tests/transforms/test_lambda_transform.py tests/transforms/test_collate.py tests/transforms/test_reproducibility.py tests/data/test_image.py tests/data/test_io.py tests/data/sampler/test_label_sampler.py tests/data/sampler/test_weighted_sampler.py tests/data/sampler/test_uniform_sampler.py tests/data/sampler/test_patch_sampler.py tests/data/sampler/test_random_sampler.py tests/data/inference/test_aggregator.py tests/data/inference/test_grid_sampler.py tests/data/inference/test_inference.py tests/data/test_subject.py tests/data/test_subjects_dataset.py tests/data/test_queue.py tests/utils.py tests/test_utils.py tests/test_cli.py tests/datasets/test_ixi.py print_system.py

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Files Coverage
print_system.py 0.00%
tests/data/inference/test_aggregator.py 100.00%
tests/data/inference/test_grid_sampler.py 100.00%
tests/data/inference/test_inference.py 100.00%
tests/data/sampler/test_label_sampler.py 100.00%
tests/data/sampler/test_patch_sampler.py 100.00%
tests/data/sampler/test_random_sampler.py 100.00%
tests/data/sampler/test_uniform_sampler.py 100.00%
tests/data/sampler/test_weighted_sampler.py 100.00%
tests/data/test_image.py 100.00%
tests/data/test_io.py 100.00%
tests/data/test_queue.py 100.00%
tests/data/test_subject.py 100.00%
tests/data/test_subjects_dataset.py 100.00%
tests/datasets/test_ixi.py 100.00%
tests/test_cli.py 100.00%
tests/test_utils.py 100.00%
tests/transforms/augmentation/test_oneof.py 100.00%
tests/transforms/augmentation/test_random_affine.py 100.00%
tests/transforms/augmentation/test_random_anisotropy.py 100.00%
tests/transforms/augmentation/test_random_bias_field.py 100.00%
tests/transforms/augmentation/test_random_blur.py 100.00%
tests/transforms/augmentation/test_random_elastic_deformation.py 100.00%
tests/transforms/augmentation/test_random_flip.py 100.00%
tests/transforms/augmentation/test_random_gamma.py 100.00%
tests/transforms/augmentation/test_random_ghosting.py 100.00%
tests/transforms/augmentation/test_random_labels_to_image.py 100.00%
tests/transforms/augmentation/test_random_motion.py 100.00%
tests/transforms/augmentation/test_random_noise.py 100.00%
tests/transforms/augmentation/test_random_spike.py 100.00%
tests/transforms/augmentation/test_random_swap.py 100.00%
tests/transforms/label/test_remap_labels.py 100.00%
tests/transforms/label/test_remove_labels.py 100.00%
tests/transforms/label/test_sequential_labels.py 100.00%
tests/transforms/preprocessing/test_crop.py 100.00%
tests/transforms/preprocessing/test_crop_pad.py 100.00%
tests/transforms/preprocessing/test_ensure_shape_multiple.py 100.00%
tests/transforms/preprocessing/test_histogram_standardization.py 100.00%
tests/transforms/preprocessing/test_pad.py 100.00%
tests/transforms/preprocessing/test_resample.py 100.00%
tests/transforms/preprocessing/test_rescale.py 100.00%
tests/transforms/preprocessing/test_to_canonical.py 100.00%
tests/transforms/preprocessing/test_z_normalization.py 100.00%
tests/transforms/test_collate.py 100.00%
tests/transforms/test_invertibility.py 100.00%
tests/transforms/test_lambda_transform.py 100.00%
tests/transforms/test_reproducibility.py 100.00%
tests/transforms/test_transforms.py 100.00%
tests/utils.py 95.76%
torchio/__init__.py 100.00%
torchio/cli/apply_transform.py 77.50%
torchio/cli/print_info.py 0.00%
torchio/constants.py 100.00%
torchio/data/__init__.py 100.00%
torchio/data/dataset.py 95.35%
torchio/data/image.py 88.89%
torchio/data/inference/__init__.py 100.00%
torchio/data/inference/aggregator.py 97.73%
torchio/data/inference/grid_sampler.py 100.00%
torchio/data/io.py 96.15%
torchio/data/queue.py 86.27%
torchio/data/sampler/__init__.py 100.00%
torchio/data/sampler/label.py 93.75%
torchio/data/sampler/sampler.py 100.00%
torchio/data/sampler/uniform.py 86.36%
torchio/data/sampler/weighted.py 90.22%
torchio/data/subject.py 96.62%
torchio/datasets/__init__.py 100.00%
torchio/datasets/bite.py 33.33%
torchio/datasets/episurg.py 29.11%
torchio/datasets/fpg.py 45.00%
torchio/datasets/itk_snap/__init__.py 100.00%
torchio/datasets/itk_snap/itk_snap.py 47.22%
torchio/datasets/ixi.py 40.74%
torchio/datasets/mni/__init__.py 100.00%
torchio/datasets/mni/colin.py 28.57%
torchio/datasets/mni/icbm.py 22.22%
torchio/datasets/mni/mni.py 100.00%
torchio/datasets/mni/pediatric.py 34.62%
torchio/datasets/mni/sheep.py 43.75%
torchio/datasets/slicer.py 50.00%
torchio/download.py 23.40%
torchio/reference.py 100.00%
torchio/transforms/__init__.py 100.00%
torchio/transforms/augmentation/__init__.py 100.00%
torchio/transforms/augmentation/composition.py 91.03%
torchio/transforms/augmentation/intensity/__init__.py 100.00%
torchio/transforms/augmentation/intensity/random_bias_field.py 96.34%
torchio/transforms/augmentation/intensity/random_blur.py 100.00%
torchio/transforms/augmentation/intensity/random_gamma.py 96.00%
torchio/transforms/augmentation/intensity/random_ghosting.py 99.03%
torchio/transforms/augmentation/intensity/random_labels_to_image.py 95.71%
torchio/transforms/augmentation/intensity/random_motion.py 100.00%
torchio/transforms/augmentation/intensity/random_noise.py 97.87%
torchio/transforms/augmentation/intensity/random_spike.py 98.39%
torchio/transforms/augmentation/intensity/random_swap.py 97.03%
torchio/transforms/augmentation/random_transform.py 100.00%
torchio/transforms/augmentation/spatial/__init__.py 100.00%
torchio/transforms/augmentation/spatial/random_affine.py 85.06%
torchio/transforms/augmentation/spatial/random_anisotropy.py 93.02%
torchio/transforms/augmentation/spatial/random_elastic_deformation.py 100.00%
torchio/transforms/augmentation/spatial/random_flip.py 100.00%
torchio/transforms/data_parser.py 92.93%
torchio/transforms/fourier.py 100.00%
torchio/transforms/intensity_transform.py 100.00%
torchio/transforms/interpolation.py 90.00%
torchio/transforms/lambda_transform.py 100.00%
torchio/transforms/preprocessing/__init__.py 100.00%
torchio/transforms/preprocessing/intensity/__init__.py 100.00%
torchio/transforms/preprocessing/intensity/histogram_standardization.py 94.66%
torchio/transforms/preprocessing/intensity/normalization_transform.py 93.33%
torchio/transforms/preprocessing/intensity/rescale.py 92.11%
torchio/transforms/preprocessing/intensity/z_normalization.py 100.00%
torchio/transforms/preprocessing/label/contour.py 36.36%
torchio/transforms/preprocessing/label/keep_largest_component.py 30.77%
torchio/transforms/preprocessing/label/label_transform.py 100.00%
torchio/transforms/preprocessing/label/one_hot.py 31.25%
torchio/transforms/preprocessing/label/remap_labels.py 100.00%
torchio/transforms/preprocessing/label/remove_labels.py 100.00%
torchio/transforms/preprocessing/label/sequential_labels.py 100.00%
torchio/transforms/preprocessing/spatial/bounds_transform.py 87.50%
torchio/transforms/preprocessing/spatial/crop.py 92.31%
torchio/transforms/preprocessing/spatial/crop_or_pad.py 96.49%
torchio/transforms/preprocessing/spatial/ensure_shape_multiple.py 100.00%
torchio/transforms/preprocessing/spatial/pad.py 89.74%
torchio/transforms/preprocessing/spatial/resample.py 90.77%
torchio/transforms/preprocessing/spatial/to_canonical.py 100.00%
torchio/transforms/spatial_transform.py 100.00%
torchio/transforms/transform.py 87.11%
torchio/typing.py 100.00%
torchio/utils.py 91.30%
torchio/visualization.py 95.83%
Project Totals (132 files) 90.55%
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