diegozea / MIToS.jl

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@@ -21,7 +21,11 @@
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"Fast and accurate multivariate Gaussian modeling of protein families: predicting residue contacts and protein-interaction partners."
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PloS one 9, no. 3 (2014): e92721.
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"""
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function gaussdca(msa; juliapath::String=joinpath(Sys.BINDIR,Base.julia_exename()), kargs...)
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function gaussdca(
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		  msa; 
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		  juliapath::String=joinpath(Sys.BINDIR,Base.julia_exename()), 
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		  project::String=Base.active_project(),
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		  kargs...)
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    base_name = tempname()
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    if Sys.iswindows()
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        base_name = escape_string(base_name)
@@ -37,7 +41,7 @@
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    write(msa_file, msa, FASTA)
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    try
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        _create_script(script_file, msa_file, jdl_file; kargs...)
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        run(`$juliapath $script_file`)
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        run(`$juliapath --project=$project $script_file`)
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        pairedvalues = open(deserialize, jdl_file, "r")
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        for (i,j,value) in pairedvalues
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           plm[i,j] = value

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Files Coverage
src 89.28%
Project Totals (53 files) 89.28%
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