diegozea
src/MSA/Concatenation.jl
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@@ -62,11 +62,14 @@
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| 62 | 62 | annotfile |
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| 63 | 63 | end |
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| 64 | 64 | ||
| 65 | - | function _get_seqname_mapping(concatenated_seqnames) |
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| 65 | + | function _get_seqname_mapping(concatenated_seqnames, msas...) |
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| 66 | 66 | mapping = Dict{Tuple{Int, String}, String}() |
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| 67 | - | for concatenated_seqname in concatenated_seqnames |
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| 68 | - | for (i, seqname) in enumerate(split(concatenated_seqname, "_&_")) |
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| 69 | - | mapping[(i, seqname)] = concatenated_seqname |
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| 67 | + | seq_names = hcat([sequencenames(msa) for msa in msas]...) |
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| 68 | + | nseq, nmsa = size(seq_names) |
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| 69 | + | @assert nseq == length(concatenated_seqnames) |
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| 70 | + | for i in 1:nseq |
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| 71 | + | for j in 1:nmsa |
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| 72 | + | mapping[(j, seq_names[i, j])] = concatenated_seqnames[i] |
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| 70 | 73 | end |
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| 71 | 74 | end |
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| 72 | 75 | mapping |
@@ -156,7 +159,7 @@
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| 156 | 159 | colnames = _concatenated_col_names(msa...) |
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| 157 | 160 | setnames!(concatenated_msa, seqnames, 1) |
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| 158 | 161 | setnames!(concatenated_msa, colnames, 2) |
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| 159 | - | seqname_mapping = _get_seqname_mapping(seqnames) |
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| 162 | + | seqname_mapping = _get_seqname_mapping(seqnames, msa...) |
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| 160 | 163 | seq_lengths = _get_seq_lengths(msa...) |
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| 161 | 164 | old_annot = annotations.([msa...]) |
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| 162 | 165 | new_annot = Annotations( |
| Files | Coverage |
|---|---|
| src | 89.29% |
| Project Totals (53 files) | 89.29% |
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