diegozea
src/Information/Externals.jl
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Project.toml
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@@ -21,7 +21,11 @@
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| 21 | 21 | "Fast and accurate multivariate Gaussian modeling of protein families: predicting residue contacts and protein-interaction partners." |
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| 22 | 22 | PloS one 9, no. 3 (2014): e92721. |
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| 23 | 23 | """ |
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| 24 | - | function gaussdca(msa; juliapath::String=joinpath(Sys.BINDIR,Base.julia_exename()), kargs...) |
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| 24 | + | function gaussdca( |
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| 25 | + | msa; |
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| 26 | + | juliapath::String=joinpath(Sys.BINDIR,Base.julia_exename()), |
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| 27 | + | project::String=Base.active_project(), |
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| 28 | + | kargs...) |
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| 25 | 29 | base_name = tempname() |
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| 26 | 30 | if Sys.iswindows() |
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| 27 | 31 | base_name = escape_string(base_name) |
@@ -37,7 +41,7 @@
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| 37 | 41 | write(msa_file, msa, FASTA) |
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| 38 | 42 | try |
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| 39 | 43 | _create_script(script_file, msa_file, jdl_file; kargs...) |
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| 40 | - | run(`$juliapath $script_file`) |
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| 44 | + | run(`$juliapath --project=$project $script_file`) |
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| 41 | 45 | pairedvalues = open(deserialize, jdl_file, "r") |
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| 42 | 46 | for (i,j,value) in pairedvalues |
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| 43 | 47 | plm[i,j] = value |
| Files | Coverage |
|---|---|
| src | 89.28% |
| Project Totals (53 files) | 89.28% |
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