bodkan / admixr

Compare a8cd88b ... +1 ... 44d6c2f

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@@ -170,7 +170,7 @@
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  # for our purposes, this means either 0 (no overlap) or 1 (overlap)
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  output <- tempfile()
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  # run bedtools
173 -
  sprintf("bedtools intersect %s -c -a %s -b %s > %s",
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  sprintf("bedtools intersect %s -c -a %s -b %s -nonamecheck > %s",
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          ifelse(remove, "-v", ""), tmpbed, bed, output) %>% system()
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  # collect the results
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  snp_hits <- readr::read_tsv(output,

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What changes does Codecov check for?
Lines, not adjusted in diff, that have changed coverage data.
Files that introduced coverage data that had none before.
Files that have missing coverage data that once were tracked.
Files Coverage
R 86.49%
Project Totals (7 files) 86.49%
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