Updated PubMed URL scheme
aaronwolen
Showing 2 of 8 files from the diff.
R/build-urls.r
changed.
R/db-links.r
changed.
Other files ignored by Codecov
tests/testthat/test-tags-pubmed.r
has changed.
DESCRIPTION
has changed.
tests/testthat/test-links-pubmed.r
has changed.
man/links.Rd
has changed.
man/biolink.Rd
has changed.
R/biolink.r
has changed.
@@ -34,7 +34,7 @@
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| 34 | 34 | #' @export |
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| 35 | 35 | #' @describeIn urls for PubMed based on PMID (PubMed identifier) |
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| 36 | 36 | url_pubmed <- function(id) { |
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| 37 | - | paste0("https://www.ncbi.nlm.nih.gov/pubmed/", check_id(id, "pubmed")) |
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| 37 | + | paste0("https://pubmed.ncbi.nlm.nih.gov/", check_id(id, "pubmed")) |
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| 38 | 38 | } |
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| 39 | 39 | ||
| 40 | 40 | #' @export |
@@ -6,7 +6,7 @@
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| 6 | 6 | #' @section Link Customization: |
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| 7 | 7 | #' By default the hyperlinked text is just the `id`, so |
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| 8 | 8 | #' `link_pubmed("22066989")` becomes |
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| 9 | - | #' [22066989](https://www.ncbi.nlm.nih.gov/pubmed/22066989). The `text` argument |
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| 9 | + | #' [22066989](https://pubmed.ncbi.nlm.nih.gov/22066989). The `text` argument |
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| 10 | 10 | #' allows you to customize the hyperlinked text. To display a hyperlinked URL |
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| 11 | 11 | #' (e.g., <https://www.r-project.org>), set `text = NULL`. |
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| 12 | 12 | #' |
@@ -46,8 +46,8 @@
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| 46 | 46 | #' |
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| 47 | 47 | #' @references |
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| 48 | 48 | #' - [Gene Ontology Consortium](http://amigo.geneontology.org) |
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| 49 | - | #' - [KEGG Pathway Database](http://www.kegg.jp/kegg/pathway.html) |
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| 50 | - | #' - [NCBI PubMed](https://www.ncbi.nlm.nih.gov/pubmed/) |
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| 49 | + | #' - [KEGG Pathway Database](https://www.kegg.jp/kegg/pathway.html) |
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| 50 | + | #' - [NCBI PubMed](https://pubmed.ncbi.nlm.nih.gov) |
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| 51 | 51 | #' - [NCBI Gene](https://www.ncbi.nlm.nih.gov/gene) |
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| 52 | 52 | #' |
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| 53 | 53 | #' @name links |
| Files | Coverage |
|---|---|
| R | 100.00% |
| Project Totals (6 files) | 100.00% |
329412561
| 1 |
comment: false |
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