achubaty
R/prepSpeciesLayers.R
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DESCRIPTION
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@@ -380,8 +380,18 @@
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| 380 | 380 | ## TODO: this is sneaky and annoying (runName is part of outputPath) |
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| 381 | 381 | if (grepl("AOU", outputPath)) { |
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| 382 | 382 | sA <- "ceon" |
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| 383 | + | if (grepl("test", outputPath)) { |
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| 384 | + | sAN <- "AOU_test" |
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| 385 | + | } else { |
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| 386 | + | sAN <- "AOU" |
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| 387 | + | } |
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| 383 | 388 | } else if (grepl("ROF", outputPath)) { |
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| 384 | 389 | sA <- "rof" |
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| 390 | + | if (grepl("test", outhputPath)) { |
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| 391 | + | sAN <- "ROF_test" |
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| 392 | + | } else { |
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| 393 | + | sAN <- "ROF" |
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| 394 | + | } |
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| 385 | 395 | } |
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| 386 | 396 | ||
| 387 | 397 | if (grepl("res125", outputPath)) { |
@@ -447,8 +457,6 @@
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| 447 | 457 | ## merge species layers (currently only Popu; TODO: pine?) |
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| 448 | 458 | idsPopu <- grep("Popu", CCstackNames) |
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| 449 | 459 | mergedPopu <- calc(stack(CCstack[[idsPopu]]), sum, na.rm = TRUE) |
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| 450 | - | mergedPopu <- writeRaster(mergedPopu, filename = file.path(outputPath, "ONFRI_Popu_spp.tif"), |
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| 451 | - | overwrite = TRUE) |
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| 452 | 460 | ||
| 453 | 461 | CCstack <- dropLayer(CCstack, idsPopu) |
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| 454 | 462 | CCstack[["Popu_sp"]] <- mergedPopu ## NOTE: addLayer sporadically fails to add layer, w/o warning |
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| R | 0.00% |
| Project Totals (19 files) | 0.00% |
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