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@@ -380,8 +380,18 @@
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  ## TODO: this is sneaky and annoying (runName is part of outputPath)
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  if (grepl("AOU", outputPath)) {
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    sA <- "ceon"
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    if (grepl("test", outputPath)) {
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      sAN <- "AOU_test"
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    } else {
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      sAN <- "AOU"
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    }
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  } else if (grepl("ROF", outputPath)) {
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    sA <- "rof"
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    if (grepl("test", outhputPath)) {
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      sAN <- "ROF_test"
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    } else {
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      sAN <- "ROF"
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    }
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  }
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  if (grepl("res125", outputPath)) {
@@ -447,8 +457,6 @@
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  ## merge species layers (currently only Popu; TODO: pine?)
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  idsPopu <- grep("Popu", CCstackNames)
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  mergedPopu <- calc(stack(CCstack[[idsPopu]]), sum, na.rm = TRUE)
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  mergedPopu <- writeRaster(mergedPopu, filename = file.path(outputPath, "ONFRI_Popu_spp.tif"),
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                            overwrite = TRUE)
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  CCstack <- dropLayer(CCstack, idsPopu)
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  CCstack[["Popu_sp"]] <- mergedPopu ## NOTE: addLayer sporadically fails to add layer, w/o warning
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comment: false
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coverage:
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  status:
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    project:
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      default:
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        target: auto
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        threshold: 1%
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        informational: true
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    patch:
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      default:
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        target: auto
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        threshold: 1%
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        informational: true
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