EricMarcon / entropart

Compare f792f9a ... +2 ... 5731e33

76.29% 100.00% ø

Overview Diff Coverage Changes Files Commits
Coverage Reach
CheckentropartArguments.R SpeciesDistribution.R DivProfile.R Tsallis.R Shannon.R Richness.R Accumulation.R Hqz.R DivEst.R Coverage.R CommunityProfile.R DivPart.R HqzBeta.R TsallisBeta.R ShannonBeta.R PhyloDiversity.R PhyloBetaEntropy.R PhyloEntropy.R Simpson.R PhyloApply.R Dqz.R Rao.R SimpsonBeta.R Diversity.R HurlbertD.R ChaoPD.R Hurlbert.R rCommunity.R MetaCommunity.R AllenH.R GenSimpson.R GenSimpsonD.R PhyloValue.R Preprocess.Tree.R AlphaEntropy.R BetaEntropy.R AbdFreqCount.R MCdiversity.R SimTest.R MCentropy.R AlphaDiversity.R BetaDiversity.R Preprocess.MC.R GammaEntropy.R ShuffleMC.R ArgumentOriginalName.R expq.R lnq.R Optimal.Similarity.R EntropyCI.R MergeC.R CEnvelope.R GammaDiversity.R MergeMC.R Enq.R mergeandlabel.R KLq.R PDFD.R PPtree.R

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Showing 1 of 4 files from the diff.
84.04% 100.00% ø
R/DivProfile.R changed.
Other files ignored by Codecov
NEWS.md has changed.
DESCRIPTION has changed.
pkgdown/_pkgdown.yml has changed.

@@ -74,7 +74,7 @@
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    if(interactive()) utils::setTxtProgressBar(ProgressBar, -1)
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    # Each MC of this list is a simulation set of each original community
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    # Build simulated MCs by picking simulated communities
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    SimMC <- lapply(seq_len(NumberOfSimulations), function(i) MetaCommunity(sapply(ResampledCs, function(mc) mc$Nsi[, i]), Weights=MC$Wi))
77 + 
    SimMC <- lapply(seq_len(NumberOfSimulations), function(i) MetaCommunity(vapply(ResampledCs, function(mc) mc$Nsi[, i], FUN.VALUE=rep(0, MC$Nspecies)), Weights=MC$Wi))
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    if(ShowProgressBar & interactive())
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      utils::setTxtProgressBar(ProgressBar, -0)
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4 Commits

Eric Marcon
76.29% ø ø
v. 1.6-6.9005
EricMarcon
5731e33
CI Passed
Eric Marcon
Contextual
Cleaned trailing spaces
EricMarcon
c02b3d0
Eric Marcon
Contextual
vapply rather than sapply
EricMarcon
e5eb38a
Hiding 2 contexual commits
Eric Marcon
76.29% 64.29% ø
Arguments for autoplot
EricMarcon
f792f9a
CI Passed
Files Coverage
R 76.29%
Project Totals (59 files) 76.29%
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