Dana-Farber-AIOS / pathml
Showing 1 of 2 files from the diff.

@@ -198,16 +198,19 @@
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        stride_i, stride_j = stride
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        if pad:
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            n_chunk_i = i // stride_i + 1
203 -
            n_chunk_j = j // stride_j + 1
204 -
201 +
        # calculate number of expected tiles
202 +
        # check for tile shape evenly dividing slide shape to fix https://github.com/Dana-Farber-AIOS/pathml/issues/305
203 +
        if pad and i % stride_i != 0:
204 +
            n_tiles_i = i // stride_i + 1
205 +
        else:
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            n_tiles_i = (i - shape[0]) // stride_i + 1
207 +
        if pad and j % stride_j != 0:
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            n_tiles_j = j // stride_j + 1
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        else:
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            n_chunk_i = (i - shape[0]) // stride_i + 1
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            n_chunk_j = (j - shape[1]) // stride_j + 1
210 +
            n_tiles_j = (j - shape[1]) // stride_j + 1
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        for ix_i in range(n_chunk_i):
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            for ix_j in range(n_chunk_j):
212 +
        for ix_i in range(n_tiles_i):
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            for ix_j in range(n_tiles_j):
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                coords = (int(ix_i * stride_i), int(ix_j * stride_j))
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                # get image for tile
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                tile_im = self.extract_region(location=coords, size=shape, level=level)
@@ -549,16 +552,19 @@
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        stride_i, stride_j = stride
551 554
552 -
        if pad:
553 -
            n_chunk_i = i // stride_i + 1
554 -
            n_chunk_j = j // stride_j + 1
555 -
555 +
        # calculate number of expected tiles
556 +
        # check for tile shape evenly dividing slide shape to fix https://github.com/Dana-Farber-AIOS/pathml/issues/305
557 +
        if pad and i % stride_i != 0:
558 +
            n_tiles_i = i // stride_i + 1
559 +
        else:
560 +
            n_tiles_i = (i - shape[0]) // stride_i + 1
561 +
        if pad and j % stride_j != 0:
562 +
            n_tiles_j = j // stride_j + 1
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        else:
557 -
            n_chunk_i = (i - shape[0]) // stride_i + 1
558 -
            n_chunk_j = (j - shape[1]) // stride_j + 1
564 +
            n_tiles_j = (j - shape[1]) // stride_j + 1
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560 -
        for ix_i in range(n_chunk_i):
561 -
            for ix_j in range(n_chunk_j):
566 +
        for ix_i in range(n_tiles_i):
567 +
            for ix_j in range(n_tiles_j):
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                coords = (int(ix_i * stride_i), int(ix_j * stride_j))
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                if coords[0] + shape[0] < i and coords[1] + shape[1] < j:
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                    # get image for tile
Files Coverage
pathml 86.88%
Project Totals (26 files) 86.88%
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Build #1981119202 -
PYTHON=undefined
OS=undefined
codecov-umbrella
Build #1981119202 -
PYTHON=undefined
OS=undefined

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