TRAVIS_OS_NAME=linux TRAVIS_PYTHON_VERSION=3.8 <<<<<< ENV .bumpversion.cfg .coveragerc .github/ISSUE_TEMPLATE/bug_report.md .github/ISSUE_TEMPLATE/feature_request.md .github/ISSUE_TEMPLATE/question.md .github/PULL_REQUEST_TEMPLATE.md .gitignore .pre-commit-config.yaml .readthedocs.yml .rstcheck.cfg .scripts/ci/before_install.sh .scripts/ci/install.sh .scripts/ci/static_analysis.sh .scripts/ci/test.sh .scripts/ci/update_bioconda.sh .scripts/ci/update_notebooks.sh .scripts/ci/upload_coverage.sh .travis.yml LICENSE README.rst cellrank/__init__.py cellrank/datasets/__init__.py cellrank/datasets/_datasets.py cellrank/logging/__init__.py cellrank/logging/_logging.py cellrank/pl/__init__.py cellrank/pl/_cluster_fates.py cellrank/pl/_cluster_lineage.py cellrank/pl/_gene_trend.py cellrank/pl/_graph.py cellrank/pl/_heatmap.py cellrank/pl/_init_term_states.py cellrank/pl/_lineages.py cellrank/pl/_utils.py cellrank/settings/__init__.py cellrank/settings/_settings.py cellrank/tl/__init__.py 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cellrank/ul/models/_pygam_model.py cellrank/ul/models/_sklearn_model.py cellrank/ul/models/_utils.py docs/Makefile docs/make.bat docs/requirements.txt docs/source/_ext/edit_on_github.py docs/source/_static/css/custom.css docs/source/_templates/autosummary/base.rst docs/source/_templates/autosummary/class.rst docs/source/_templates/autosummary/function.rst docs/source/api.rst docs/source/benchmarks.rst docs/source/binder/requirements.txt docs/source/classes.rst docs/source/conf.py docs/source/index.rst docs/source/installation.rst docs/source/references.rst docs/source/release_notes.rst examples/README.rst examples/estimators/README.rst examples/estimators/compute_abs_probs.py examples/estimators/compute_coarse_T.py examples/estimators/compute_eigendecomposition.py examples/estimators/compute_fit.py examples/estimators/compute_lineage_drivers.py examples/estimators/compute_macrostates.py examples/estimators/compute_schur_matrix.py examples/estimators/compute_schur_vectors.py examples/estimators/compute_terminal_states_gpcca.py examples/other/README.rst examples/other/compute_kernel_tricks.py examples/other/compute_lineage_tricks.py examples/other/plot_model.py examples/plotting/README.rst examples/plotting/plot_cluster_fates.py examples/plotting/plot_cluster_lineage.py examples/plotting/plot_directed_paga.py examples/plotting/plot_gene_trends.py examples/plotting/plot_graph.py examples/plotting/plot_heatmap.py examples/plotting/plot_initial_states.py examples/plotting/plot_lineage_drivers.py examples/plotting/plot_lineages.py examples/plotting/plot_terminal_states.py pyproject.toml requirements.txt resources/images/cellrank_fate_map.png setup.py tests/_ground_truth_adatas/adata_100.h5ad tests/_ground_truth_adatas/adata_200.h5ad tests/_ground_truth_adatas/adata_50.h5ad tests/_ground_truth_figures/all_models_for_1_gene_failed.png tests/_ground_truth_figures/all_models_for_1_gene_failed_same_plot.png 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path=/home/travis/build/theislab/cellrank/coverage.xml /home/travis/build/theislab/cellrank <<<<<< EOF