MANIFEST.in docs_jupyter/feature1_append.ipynb docs_jupyter/feature2_imply.ipynb docs_jupyter/feature3_derived.ipynb docs_jupyter/feature4_subsample_table.ipynb docs_jupyter/feature5_amend.ipynb docs_jupyter/tutorial.ipynb example_peps-cfg2/example_BiocProject/data/laminB1Lads.bed example_peps-cfg2/example_BiocProject/data/vistaEnhancers.bed example_peps-cfg2/example_BiocProject/readBedFiles.R example_peps-cfg2/example_BiocProject/readBedFiles_resize.R example_peps-cfg2/example_BiocProject_exceptions/readBedFilesExceptions.R example_peps-cfg2/example_BiocProject_remote/readRemoteData.R example_peps-cfg2/example_BiocProject_remote/readRemoteData_resize.R example_peps-cfg2/example_piface/readData.R example_peps-cfg2/output/results_pipeline/sample1/other_pipeline1/sample1_GSM2471255_1.bw example_peps-cfg2/output/results_pipeline/sample1/other_pipeline1/sample1_GSM2471255_2.bw example_peps-cfg2/output/results_pipeline/sample1/pipeline1/sample1_GSM2471255_1.bw example_peps-cfg2/output/results_pipeline/sample1/pipeline1/sample1_GSM2471255_2.bw example_peps-cfg2/output/results_pipeline/sample2/other_pipeline1/sample2_GSM2471300_1.bw example_peps-cfg2/output/results_pipeline/sample2/other_pipeline1/sample2_GSM2471300_2.bw example_peps-cfg2/output/results_pipeline/sample2/pipeline1/sample2_GSM2471300_1.bw example_peps-cfg2/output/results_pipeline/sample2/pipeline1/sample2_GSM2471300_2.bw example_peps-cfg2/output/results_pipeline/sample3/other_pipeline2/sample3_GSM2471249_1.bw example_peps-cfg2/output/results_pipeline/sample3/other_pipeline2/sample3_GSM2471249_2.bw example_peps-cfg2/output/results_pipeline/sample3/pipeline2/sample3_GSM2471249_1.bw example_peps-cfg2/output/results_pipeline/sample3/pipeline2/sample3_GSM2471249_2.bw oldtests/__init__.py oldtests/conftest.py oldtests/data/d-bamfile.bam oldtests/data/example_peps-cfg2/example_BiocProject/data/laminB1Lads.bed oldtests/data/example_peps-cfg2/example_BiocProject/data/vistaEnhancers.bed oldtests/data/example_peps-cfg2/example_BiocProject/readBedFiles.R oldtests/data/example_peps-cfg2/example_BiocProject/readBedFiles_resize.R oldtests/data/example_peps-cfg2/example_BiocProject_exceptions/readBedFilesExceptions.R oldtests/data/example_peps-cfg2/example_BiocProject_remote/readRemoteData.R oldtests/data/example_peps-cfg2/example_BiocProject_remote/readRemoteData_resize.R oldtests/data/example_peps-cfg2/example_piface/readData.R oldtests/data/example_peps-cfg2/output/results_pipeline/sample1/other_pipeline1/sample1_GSM2471255_1.bw oldtests/data/example_peps-cfg2/output/results_pipeline/sample1/other_pipeline1/sample1_GSM2471255_2.bw oldtests/data/example_peps-cfg2/output/results_pipeline/sample1/pipeline1/sample1_GSM2471255_1.bw oldtests/data/example_peps-cfg2/output/results_pipeline/sample1/pipeline1/sample1_GSM2471255_2.bw oldtests/data/example_peps-cfg2/output/results_pipeline/sample2/other_pipeline1/sample2_GSM2471300_1.bw oldtests/data/example_peps-cfg2/output/results_pipeline/sample2/other_pipeline1/sample2_GSM2471300_2.bw oldtests/data/example_peps-cfg2/output/results_pipeline/sample2/pipeline1/sample2_GSM2471300_1.bw oldtests/data/example_peps-cfg2/output/results_pipeline/sample2/pipeline1/sample2_GSM2471300_2.bw oldtests/data/example_peps-cfg2/output/results_pipeline/sample3/other_pipeline2/sample3_GSM2471249_1.bw oldtests/data/example_peps-cfg2/output/results_pipeline/sample3/other_pipeline2/sample3_GSM2471249_2.bw oldtests/data/example_peps-cfg2/output/results_pipeline/sample3/pipeline2/sample3_GSM2471249_1.bw oldtests/data/example_peps-cfg2/output/results_pipeline/sample3/pipeline2/sample3_GSM2471249_2.bw oldtests/helpers.py oldtests/interactive.py oldtests/models/conftest.py oldtests/models/independent/test_Paths.py oldtests/models/independent/test_Project.py oldtests/models/independent/test_ProjectContext.py oldtests/models/independent/test_Sample.py oldtests/models/independent/test_SnakeProject.py oldtests/models/independent/test_fetch_samples.py oldtests/models/independent/test_project_repr.py oldtests/models/independent/test_project_tables.py oldtests/models/integration/test_Project_Sample_interaction.py oldtests/models/integration/test_sample_name_duplication_handling.py oldtests/models/test_models_smoke.py oldtests/pipe_nolooperargs/pipelines/testngs.sh oldtests/pipe_nolooperargs/pipelines/testpipeline.sh oldtests/pipelines/pipelines/testngs.sh oldtests/pipelines/pipelines/testpipeline.sh oldtests/regression/test_constant_attributes_and_subproject.py oldtests/regression/test_sample_merger_dynamism.py oldtests/regression/test_subproject_activation.py oldtests/smoketests/conftest.py oldtests/smoketests/test_Project.py oldtests/test_utils.py peppy/__init__.py peppy/_version.py peppy/const.py peppy/exceptions.py peppy/project.py peppy/sample.py peppy/utils.py pytest.ini setup.cfg setup.py tests/__init__.py tests/data/example_peps-master/example_BiocProject/data/laminB1Lads.bed tests/data/example_peps-master/example_BiocProject/data/vistaEnhancers.bed tests/data/example_peps-master/example_BiocProject/readBedFiles.R tests/data/example_peps-master/example_BiocProject/readBedFiles_resize.R tests/data/example_peps-master/example_BiocProject_exceptions/readBedFilesExceptions.R tests/data/example_peps-master/example_BiocProject_remote/readRemoteData.R tests/data/example_peps-master/example_BiocProject_remote/readRemoteData_resize.R tests/data/example_peps-master/example_piface/readData.R tests/data/example_peps-master/output/results_pipeline/sample1/other_pipeline1/sample1_GSM2471255_1.bw tests/data/example_peps-master/output/results_pipeline/sample1/other_pipeline1/sample1_GSM2471255_2.bw tests/data/example_peps-master/output/results_pipeline/sample1/pipeline1/sample1_GSM2471255_1.bw tests/data/example_peps-master/output/results_pipeline/sample1/pipeline1/sample1_GSM2471255_2.bw tests/data/example_peps-master/output/results_pipeline/sample2/other_pipeline1/sample2_GSM2471300_1.bw tests/data/example_peps-master/output/results_pipeline/sample2/other_pipeline1/sample2_GSM2471300_2.bw tests/data/example_peps-master/output/results_pipeline/sample2/pipeline1/sample2_GSM2471300_1.bw tests/data/example_peps-master/output/results_pipeline/sample2/pipeline1/sample2_GSM2471300_2.bw tests/data/example_peps-master/output/results_pipeline/sample3/other_pipeline2/sample3_GSM2471249_1.bw tests/data/example_peps-master/output/results_pipeline/sample3/other_pipeline2/sample3_GSM2471249_2.bw tests/data/example_peps-master/output/results_pipeline/sample3/pipeline2/sample3_GSM2471249_1.bw tests/data/example_peps-master/output/results_pipeline/sample3/pipeline2/sample3_GSM2471249_2.bw tests/smoketests/__init__.py tests/smoketests/conftest.py tests/smoketests/test_Project.py tests/smoketests/test_Sample.py update_docs.sh update_test_data.sh <<<<<< network # path=./coverage.xml /Users/runner/work/peppy/peppy <<<<<< EOF