{"files":[{"name":"R/setupLambda.R","coverage":[null,null,null,null,153,153,153,153,153,98,null,55,null,null,null,153,87,null,66,0,66,null,153,107,null,46,null,153,null,153,153,75,null,78,null,null,0,0,null,0,null,null,153,null,null,null,null,11,11,11,9,null,2,null,null,null,11,11,6,6,null,5,5,null,11,null,11,9,null,2,null,11,null]},{"name":"R/gBridge.R","coverage":[null,null,0,null,null,11,0,0,0,0,null,null,11,11,11,0,null,null,11,11,null,0,null,null,null,11,11,11,11,11,11,6,6,6,6,6,6,null,5,5,5,5,5,5,null,null,null,11,11,11,11,11,11,0,0,null,null,0,11,null,null,11,11,4,4,4,4,null,7,null,null,11,11,11,11,11,11,11,11,11,11,11,11,11,0,0,11,1,null,11,null]},{"name":"R/plot-cv.R","coverage":[null,null,11,11,0,0,0,0,0,0,null,0,null,11,11,11,11,0,null,null,11,11,11,9,9,9,9,2,2,0,0,0,null,2,2,2,null,2,1,1,1,1,1,1,1,1,1,null,0,0,0,0,0,0,0,0,0,0,0,0,0,null,null,11,11,11,11,11,0,11,11,11,11,11,11,11,11,null,null]},{"name":"R/plot_spline.R","coverage":[null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,27,8,11,null,0,0,27,0,0,15,null,0,0,null,27,27,12,15,15,null,27,27,27,27,27,null,null,27,27,27,27,5,5,5,5,5,5,5,5,0,5,null,22,22,22,22,22,22,22,22,22,15,22,22,22,8,5,8,3,8,8,null,null,0,null,null,null,27,27,27,27,3,null,null,27,3,null,null,null,null,27,27,13,13,null,14,14,null,27,27,27,27,0,0,null,27,27,13,13,0,0,null,13,null,null,27,27,0,0,null,27,null]},{"name":"R/predict.R","coverage":[null,null,850,0,0,null,850,850,5,845,845,20,null,825,38,38,null,787,787,null,null,845,9,798,4,12,null,782,12,12,7,null,5,null,12,null,770,11,11,7,null,4,null,11,null,4,0,18,755,0,398,357,357,357,357,0,0,0,null,0,null,null,null,0,7,3,28,7,null,21,7,null,0,14,14,14,0,10,4,4,4,3,1,1,1,null,0,null,null,null,null,null,1018,0,135,135,135,135,135,17,17,null,118,118,null,null,883,30,null,853,null,null,168,null]},{"name":"R/select.R","coverage":[null,null,0,0,0,0,0,0,0,null,0,0,0,0,0,0,0,0,0,0,null,0,0,0,0,0,0,0,null,0,0,0,0,null,0,0,0,0,null,0]},{"name":"R/cv-grpsurv.R","coverage":[null,null,22,null,null,22,22,22,21,22,22,null,null,22,22,22,22,null,null,22,0,22,22,22,22,22,22,22,22,22,22,22,22,null,0,null,22,null,22,22,22,22,22,null,22,0,300,300,null,null,null,22,22,22,null,null,22,19,19,19,null,3,3,null,22,null,22,0,22,null,null,300,300,300,null,300,300,300,300,null,300,null]},{"name":"R/newXG.R","coverage":[null,null,null,1245,5,0,null,0,0,0,1245,null,null,1245,null,null,1245,23,23,null,null,null,1245,1245,1245,1245,1245,1245,33,33,null,null,null,1245,13,null,null,1245,823,823,null,422,null,null,null,1245,1245,215,null,null,null,1245,1245,null]},{"name":"R/G.R","coverage":[null,null,1245,1245,1029,1029,null,216,216,null,1245,1220,null,1245,215,215,null,null,1030,0,0,9,0,null,1245,null,null,33,33,33,33,33,23,23,23,23,null,33,null,null,1245,1245,1245,1245,1052,null,1245,13,13,13,8,8,null,5,null,13,13,13,null,1232,1232,null,1245,null]},{"name":"R/predict_spline.R","coverage":[null,null,20,20,20,11,9,9,null,20,20,320,320,320,320,320,320,320,null,20,null]},{"name":"R/grpreg.R","coverage":[null,null,null,4,null,null,null,null,null,879,0,646,0,0,null,646,0,0,null,null,879,879,0,0,0,0,null,null,879,12,12,12,12,12,12,12,12,null,867,null,null,null,879,879,879,0,null,null,879,153,153,153,null,726,726,726,null,null,null,879,879,879,879,879,879,753,753,null,879,134,327,461,461,461,461,461,null,154,264,418,418,418,418,418,null,null,null,879,879,879,879,879,879,879,0,0,null,null,591,7,879,null,null,879,879,879,19,19,19,19,null,860,null,879,null,879,879,879,879,879,879,879,879,879,879,879,879,879,879,461,null,418,null,40,879,12,12,12,12,12,12,12,null,879,null]},{"name":"R/predict-surv.R","coverage":[null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,820,820,22,null,798,7,7,7,7,7,7,null,791,null,null,798,486,486,null,2,312,null,304,1,493,6,null,487,null,null,0,492,1,493,null,592,592,592,592,592,592,592,5590,5590,52,538,5000,5000,5000,null,null,null,null,493,490,492,492,1,1,null,493,null]},{"name":"R/cv-grpreg.R","coverage":[null,null,null,null,40,40,40,38,40,40,0,null,40,null,null,null,40,40,40,40,40,40,null,null,0,40,null,40,34,8,8,8,8,26,4,4,4,4,4,4,4,4,4,4,4,null,22,22,null,null,6,null,null,null,40,10,40,40,40,40,40,40,0,720,720,720,220,null,null,null,40,40,40,40,null,null,40,40,40,40,null,40,10,40,0,0,null,40,null,null,720,720,720,0,null,720,null,null,720,720,720,720,220,720,null]},{"name":"R/grpsurv.R","coverage":[null,null,null,0,null,null,null,null,0,354,0,0,null,354,0,0,null,354,0,0,0,0,null,null,354,5,5,5,5,5,5,5,5,null,349,null,null,null,354,354,354,0,null,null,354,53,53,null,301,301,null,null,null,354,354,354,354,354,354,123,123,null,231,231,null,354,354,354,354,354,null,null,354,354,354,354,354,354,354,0,0,null,null,231,6,354,354,null,null,354,354,null,null,354,354,354,354,354,354,354,354,354,354,354,354,354,354,354,354,22,354,5,5,5,5,5,5,5,null,354,null]},{"name":"R/logLik.R","coverage":[null,null,12,12,12,12,4,4,4,4,8,4,4,4,null,4,null,12,null,null,2,2,2,2,null]},{"name":"R/plot.R","coverage":[null,null,46,0,0,0,0,0,null,46,0,46,1,null,45,null,46,46,46,46,46,null,46,46,46,null,46,6,6,40,null,46,46,46,35,35,null,46,46,46,46,null,46,null,46,46,46,35,46,46,46,46,46,46,null,46,0,0,0,0,null,0,0,null,46,0,0,null,null]},{"name":"R/summary-cv-grpreg.R","coverage":[null,null,10,10,5,null,5,null,10,10,10,10,3,null,7,null,10,10,4,null,6,3,null,3,null,null,10,10,10,10,10,10,10,10,10,10,10,10,5,2,10,null,null,0,0,0,null,0,null,0,0,0,0,0,0,0,0,0,null]},{"name":"R/loss.R","coverage":[null,null,769,769,399,370,233,233,233,223,162,177,null,10,10,10,null,137,137,137,137,null,769,null,null,325,325,325,323,323,null,2,2,null,325,305,null,20,null,null]},{"name":"R/newY.R","coverage":[null,null,0,898,30,30,null,868,null,null,null,898,228,2,226,3,3,1,null,null,null,null,896,1,null,0,null,null,895,27,27,null,27,null,null,895,469,469,469,null,895,895,null]},{"name":"R/plot-grpsurv-func.R","coverage":[null,null,6,6,2,2,null,4,4,null,null,6,6,0,6,null,6,6,6,0,6,6,6,null]},{"name":"R/expand_spline.R","coverage":[null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,6,6,0,null,6,6,6,6,6,null,6,3,48,48,48,48,null,null,3,3,48,48,48,48,null,null,null,0,null,null,6,6,6,null,null,0,0,null,null,6,6,6,6,6,6,6,null]},{"name":"R/orthogonalize.R","coverage":[null,null,827,827,827,827,827,827,4975,0,4975,4975,4975,4975,null,827,827,827,827,827,null,null,824,824,824,592,592,232,172,172,null,60,null,null]},{"name":"R/setupLambdaCox.R","coverage":[null,null,53,53,null,null,53,53,53,29,29,29,29,29,29,null,24,24,null,null,null,53,40,null,13,null,53,null,25,28,53,null]},{"name":"R/auc.R","coverage":[null,null,0,0,0,null,0,0,0,0,0,null,0,null,0,null]},{"name":"R/residuals.R","coverage":[null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,27,6,486,486,486,486,486,null,21,11,10,8,8,8,2,2,2,2,null,0,null,null,null,27,27,27,27,27,27,27,null,0,null,0,null,null,null,661,null]},{"name":"R/gen_nonlinear_data.R","coverage":[null,null,null,null,null,null,null,null,null,null,null,null,null,0,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,null]},{"name":"R/predict-cv.R","coverage":[null,null,0,0,0,null,0,null,null,null,0,null]},{"name":"R/se-grpsurv.R","coverage":[null,null,null,3,3,300,300,null,3,null]},{"name":"R/calcNullDev.R","coverage":[null,null,40,40,40,null]},{"name":"R/print.R","coverage":[null,0,null,0]},{"name":"R/multi.R","coverage":[null,null,23,23,23,23,73,null,23,null,null,23,23,23,null]},{"name":"R/newS.R","coverage":[null,null,354,354,354,354,null]},{"name":"R/standardize.R","coverage":[null,null,891,891,891,891,null]},{"name":"src/gdfit_cox.c","coverage":[null,null,null,null,null,null,null,null,null,null,null,null,null,null,1105441,null,null,null,null,1105441,1105441,4906153,1105441,null,null,null,1105441,1105441,1105441,1105441,null,4843122,3755377,3755377,3755377,1621225777,1617470400,1617470400,1617470400,null,null,null,null,null,1105441,1105441,null,null,231,null,null,231,231,231,231,null,null,231,231,231,231,231,231,231,231,231,231,231,231,231,231,231,231,null,null,null,231,231,298941,231,23232,231,23232,231,231,1795281,231,231,null,null,231,3228,231,231,231,231,231,231,1186,null,null,null,null,null,231,18000,231,18231,231,191,null,40,40,null,null,null,22852,22627,22627,null,296773,null,null,22436,22436,111340,88904,73570,73570,null,null,22436,346,6,null,null,null,23491,181121,181115,181115,181115,181115,null,null,40821375,181115,40640260,40459145,null,40821375,40640260,null,null,null,181115,181115,40640260,40459145,null,40821375,40640260,40640260,40640260,40628621,null,null,null,181115,0,0,0,0,null,null,null,181115,527163,346048,346048,346048,16762288,16416240,16416240,16416240,null,346048,null,null,null,1697190,1516075,1516075,1516075,null,null,null,null,5790963,181115,null,null,null,23491,118966,95475,18651,18651,18651,18651,955,955,null,null,null,null,23491,1642521,22621,null,19928,null,null,231,231,231,231,231,231,231,231,231,231,231,231,231,231,null]},{"name":"src/gdfit_gaussian.c","coverage":[null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,32427,32427,242674,32427,null,null,null,1531524,null,null,null,1531524,8498377,1531524,null,null,null,1531524,1531524,1531524,1531524,null,8491993,6961071,6961071,6961071,671782784,null,null,null,1531524,1531524,null,null,null,32215,32215,32215,239103,206888,23234,166600,143366,null,23234,23234,6,6,null,23234,null,null,32215,null,null,null,34063,34063,260262,226199,10513,76910,66397,null,10513,10513,2058,2058,null,10513,null,null,34063,null,null,null,32191,null,32191,238832,206641,204779,null,1862,1718,null,206641,183571,null,23070,null,null,null,null,null,20,null,null,null,null,20,20,245,1291,1066,1066,null,225,225,56,56,56,null,null,null,null,20,20,93,73,null,1515,7610,6115,null,null,null,null,null,245,1291,1066,1066,1066,null,null,20,20,20,null,null,null,118,null,null,118,null,1921,1803,1803,1803,0,null,1803,null,1803,null,1803,null,1803,940,null,863,null,null,null,null,null,118,null,1921,1803,940,940,null,0,null,940,538,null,402,null,null,863,null,null,null,null,null,118,1921,1803,179,1061,882,null,179,179,null,null,null,null,null,98,null,98,1676,1578,254,2052,1798,null,254,254,0,0,null,254,null,null,98,null,null,null,327,null,null,null,null,null,327,327,327,327,null,null,327,327,327,327,327,327,327,327,327,327,327,327,327,327,327,327,null,null,null,327,327,1078069,327,327,32832,327,2940941,327,32832,327,32832,327,32832,327,32832,null,null,327,29798,327,11122,327,2436,327,null,null,null,327,327,327,2436,327,327,2436,2109,2109,null,327,327,327,327,null,327,327,327,null,327,327,20,20,null,307,null,null,327,327,303,null,24,24,24,24,null,327,null,null,32636,32311,32311,1093855,null,null,32008,32008,238610,206602,175431,175431,null,null,32008,174,2,null,null,32309,null,118,118,null,118,1921,null,118,null,32191,32191,null,32309,32309,null,32313,34063,177220,177220,177220,177220,177220,null,null,535328,358108,358108,358108,26757099,358108,null,null,null,1948714,1771494,1771494,1771494,1531524,null,null,null,null,8886698,177220,null,null,34063,34063,null,null,null,32313,98,null,32215,null,32313,32309,2954118,32309,null,null,null,327,327,327,327,327,327,327,327,327,327,327,327,327,327,327,327,327,327,327,327,null]},{"name":"src/gdfit_glm.c","coverage":[null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,4149278,null,null,4149278,4149278,24848056,4149278,null,null,null,4149278,4149278,4149278,4149278,null,23920692,19865580,19865580,19865580,5308447911,5288582331,5288582331,5288582331,null,null,null,null,null,4149278,4149278,null,null,264,null,null,264,264,264,264,null,null,264,264,264,264,264,264,264,264,264,264,264,264,264,264,264,264,264,null,null,null,264,264,26194,264,264,964184,264,264,26194,264,3110364,264,26194,264,26194,null,null,264,264,33480,264,264,10204,264,2166,null,null,null,null,264,264,264,184,29300,80,80,4180,4100,385,null,null,33480,null,null,264,244,null,20,20,null,null,null,25549,25302,25302,25058,945294,null,null,25058,25058,197100,172042,128050,128050,null,null,25058,642,17,null,null,null,26686,480134,480110,480110,null,null,480110,480110,334037,98143047,97809010,97809010,97809010,29399855,null,146073,146073,9314265,9168192,9168192,9168192,3090451,null,null,null,null,480110,0,0,0,0,null,null,null,480110,480110,107457312,106977202,106977202,null,480110,480110,null,null,1132018,651908,651908,651908,53097698,52445790,52445790,52445790,null,651908,null,null,null,6709760,6229650,6229650,6229650,null,null,null,480110,39785861,480110,null,null,null,26686,214251,187565,52388,52388,52388,52388,1664,1664,null,null,null,null,26686,2890545,25285,null,1401,80818,null,null,264,264,264,264,264,264,264,264,264,264,264,264,null]},{"name":"src/grpreg_init.c","coverage":[null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,3,3,3,null,null,null,34385091,34385091,34385091,7902327873,34385091,null,null,null,335655,335655,335655,16307984,335655,null,null,null,383082,383082,383082,18589523,383082,null,null,null,557496,557496,112968673,557496,null,null,null,191337,191337,11403655,11212318,null,191337,null,null,null,46610,46610,4008145,46610,null,null,null,100963246,100963246,12327491,88635755,1522976,null,87112779,null,null,null,null,6821682,6821682,38533320,6821682,6821682,null,null,null,7729769,7729769,538027,140372,null,null,null,8222,8222,8222,0,8222,8136,4910,null,null,null,7814,7814,7814,0,7814,7727,5758,4420,null,null,null,551270,551270,551270,149844,null,null,null,314978,314978,314978,50805,null]},{"name":"src/lcdfit_cox.c","coverage":[null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,129419,null,null,null,null,129419,null,129419,null,384233,254814,162359,null,92455,null,null,null,null,129419,129419,381560,null,129419,891,2673,null,129419,0,0,0,0,0,0,0,0,null,0,null,null,null,null,384233,254814,null,null,162359,162359,null,null,162359,162359,162326,162326,null,null,162359,null,null,162359,162359,160769,7836917,7676148,7676148,7676148,null,null,160769,160769,null,162359,null,null,129419,null,null,null,36428,null,null,null,null,36428,36428,108031,71603,59515,null,12088,null,null,36428,36428,107086,null,36428,315,945,null,36428,null,null,36428,108031,71603,12088,12088,12088,12088,12088,null,12088,680,680,null,null,null,36428,null,null,123,null,null,null,null,null,123,123,123,123,null,null,123,123,123,123,123,123,123,123,123,123,123,123,123,123,123,123,123,123,null,null,null,123,123,115723,123,12423,123,12423,123,123,580123,123,123,null,null,123,1279,123,123,123,123,123,123,1279,null,null,null,null,123,5800,123,5923,123,110,null,13,13,null,123,0,0,0,null,0,0,0,0,null,0,0,0,0,null,null,null,null,12410,12287,12287,null,126621,null,null,12177,12177,46431,34254,101574,67320,null,34254,null,12177,0,0,null,null,null,12936,44762,44762,44762,44762,44762,null,null,2179560,44762,2134798,2090036,null,2179560,2134798,null,null,null,44762,44762,2134798,2090036,null,2179560,2134798,2134798,2134798,2132624,null,null,null,44762,0,0,0,0,null,null,null,44762,205970,161208,161208,161208,161208,161208,161208,161208,7808400,7647192,7647192,7647192,null,161208,null,null,null,174181,129419,129419,129419,null,null,null,460784,44762,null,null,null,12936,49364,36428,36428,36428,null,null,12936,591637,12287,null,6822,null,null,123,123,123,123,123,123,123,123,123,123,123,123,123,123,null]},{"name":"src/lcdfit_gaussian.c","coverage":[null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,205200,null,null,205200,205200,null,600855,205200,27720,105354,null,205200,35843,11167,8026,0,0,0,0,0,null,0,null,null,null,null,694714,492655,null,null,349104,349104,349104,348593,348593,348593,null,349104,null,null,349104,349104,343765,27883569,343765,343765,343765,null,null,null,349104,null,null,null,null,null,52033,null,null,52033,52033,52033,150353,52033,7990,31551,null,null,null,179214,127181,null,18964,18964,18964,18964,18964,null,18964,1147,1147,1147,103107,1147,1147,null,null,null,52033,null,null,140,null,null,140,140,140,140,null,null,140,140,140,140,140,140,140,140,140,140,140,140,140,140,140,140,140,null,null,null,140,140,178840,140,140,14140,140,1016640,140,14140,140,14140,null,null,140,140,140,140,761,72,66,11821,66,null,null,1855,1855,9544,null,null,null,null,null,140,140,135,null,5,5,null,140,null,null,13974,13836,13836,185844,null,null,13701,13701,61413,47712,163920,116208,null,47712,null,13701,163,2,null,null,null,14817,56960,56960,56960,56960,null,null,56960,299358,242398,242398,242398,13880778,242398,null,null,null,262160,205200,205200,205200,null,null,null,797323,56960,null,null,null,14817,66850,52033,52033,52033,null,null,14817,13834,1013924,13834,null,14926,null,null,140,140,140,140,140,140,140,140,140,140,null]},{"name":"src/lcdfit_glm.c","coverage":[null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,259341,null,null,259341,null,259341,714599,259341,43019,171046,null,259341,54716,14014,11460,0,0,0,0,0,null,0,null,null,null,null,874208,617421,null,445860,445860,445860,445045,445045,445045,null,445860,null,null,445860,445860,418396,35500403,35082007,35082007,35082007,null,418396,418396,418396,null,445860,null,null,null,null,null,53035,null,null,53035,53035,53035,145529,53035,7498,29792,null,null,null,171823,118788,null,null,16097,16097,16097,16097,16097,null,null,null,16097,1092,1092,1092,97732,96640,96640,96640,null,1092,1092,null,null,null,53035,null,null,159,null,null,159,159,159,159,null,null,159,159,159,159,159,159,159,159,159,159,159,159,159,159,159,159,159,159,159,null,null,null,159,159,16059,159,159,172359,159,159,16059,159,1106159,159,16059,159,16059,null,null,null,159,159,159,159,null,null,null,null,159,159,159,90,7750,69,69,3469,3400,102,null,null,11219,159,625,51,46,7866,46,46,7866,7820,7820,7820,null,null,null,1830,1830,null,null,null,159,153,null,6,6,null,null,null,15888,15731,15731,15578,181166,null,null,15578,15578,64636,49058,158414,109356,null,49058,null,15578,167,2,null,null,null,16719,76963,76963,76963,null,null,76963,76963,31699,3185935,3154236,3154236,3154236,1699359,null,45264,45264,2280727,2235463,2235463,2235463,242117,null,null,null,null,76963,0,0,0,0,null,null,null,76963,76963,5466662,5389699,5389699,null,76963,76963,null,null,348598,271635,271635,271635,16574951,16303316,16303316,16303316,null,271635,null,null,null,336304,259341,259341,259341,null,null,null,76963,972585,76963,null,null,null,16719,69754,53035,53035,53035,null,null,16719,1104789,15729,null,990,12812,null,null,159,159,159,159,159,159,159,159,159,159,159,159,null]},{"name":"src/maxprod.c","coverage":[null,null,null,null,null,null,null,null,null,null,59,null,null,59,59,null,59,59,59,59,59,59,null,265,737,531,531,null,null,null,null,59,59,null,null,147,null,null,147,147,null,147,147,147,147,147,147,null,1079,932,932,4313,3381,null,932,932,932,null,null,null,147,147,null]},{"name":"src/standardize.c","coverage":[null,null,null,null,null,null,null,null,1245,null,1245,1245,null,1245,3545819,1245,29734,1245,29734,1245,1245,1245,1245,null,29734,null,28489,3573063,3544574,null,28489,3573063,null,null,28489,3573063,3544574,null,28489,3573063,null,null,null,null,1245,1245,1245,1245,1245,1245,null]}],"uploader":"R"}