CIRCLE_JOB=test_pytest <<<<<< ENV .circleci/config.yml .circleci/test_pytest.sh .coveragerc .dockerignore .et .gitattributes .github/ISSUE_TEMPLATE.md .github/PULL_REQUEST_TEMPLATE.md .github/release-drafter.yml .github/workflows/main.yml .gitignore .mailmap .pre-commit-config.yaml .readthedocs.yml .travis.yml .zenodo.json CODE_OF_CONDUCT.md CONTRIBUTING.md INSTALL LICENSE MANIFEST.in Makefile README.rst THANKS.rst Vagrantfile codecov.yml doc/.gitignore doc/Makefile doc/_static/nipy.css doc/_static/nipype-banner-bg.png doc/_static/nipype.css doc/_static/snakebrain-nipype.svg doc/_templates/gse.html doc/_templates/indexsidebar.html doc/_templates/layout.html doc/_templates/navbar.html doc/_templates/sidebar_versions.html doc/about.rst doc/changelog/0.X.X-changelog.rst doc/changelog/1.X.X-changelog.rst doc/changes.rst doc/conf.py doc/devel/architecture.rst doc/devel/cmd_interface_devel.rst doc/devel/filename_generation.rst doc/devel/gitwash/branch_list.png doc/devel/gitwash/branch_list_compare.png doc/devel/gitwash/configure_git.rst doc/devel/gitwash/development_workflow.rst doc/devel/gitwash/following_latest.rst doc/devel/gitwash/forking_button.png doc/devel/gitwash/forking_hell.rst doc/devel/gitwash/git_development.rst doc/devel/gitwash/git_install.rst doc/devel/gitwash/git_intro.rst doc/devel/gitwash/git_links.inc doc/devel/gitwash/git_resources.rst doc/devel/gitwash/index.rst doc/devel/gitwash/known_projects.inc doc/devel/gitwash/links.inc doc/devel/gitwash/patching.rst doc/devel/gitwash/pull_button.png doc/devel/gitwash/set_up_fork.rst doc/devel/gitwash/this_project.inc doc/devel/index.rst doc/devel/interface_specs.rst doc/devel/matlab_example1.py doc/devel/matlab_example2.py doc/devel/matlab_interface_devel.rst doc/devel/provenance.rst doc/devel/python_interface_devel.rst doc/devel/software_using_nipype.rst doc/devel/testing_nipype.rst doc/devel/writing_custom_interfaces.rst doc/developers.rst doc/examples.rst doc/images/nipype_architecture_overview2.png doc/images/nipype_architecture_overview2.svg doc/index.rst doc/interfaces.rst doc/links_names.txt doc/quickstart.rst doc/requirements.txt doc/searchresults.rst doc/users/install.rst doc/version.rst docker/files/neurodebian.gpg docker/files/run_builddocs.sh docker/files/run_examples.sh docker/files/run_pytests.sh docker/generate_dockerfiles.sh docker/prune_dockerfile.sh examples/README.md nipype/COMMIT_INFO.txt nipype/__init__.py nipype/algorithms/__init__.py nipype/algorithms/confounds.py nipype/algorithms/icc.py nipype/algorithms/mesh.py nipype/algorithms/metrics.py nipype/algorithms/misc.py nipype/algorithms/modelgen.py nipype/algorithms/rapidart.py nipype/algorithms/stats.py nipype/algorithms/tests/__init__.py nipype/algorithms/tests/test_CompCor.py nipype/algorithms/tests/test_ErrorMap.py nipype/algorithms/tests/test_Overlap.py nipype/algorithms/tests/test_TSNR.py nipype/algorithms/tests/test_auto_ACompCor.py nipype/algorithms/tests/test_auto_ActivationCount.py nipype/algorithms/tests/test_auto_AddCSVColumn.py nipype/algorithms/tests/test_auto_AddCSVRow.py nipype/algorithms/tests/test_auto_AddNoise.py nipype/algorithms/tests/test_auto_ArtifactDetect.py nipype/algorithms/tests/test_auto_CalculateMedian.py nipype/algorithms/tests/test_auto_CalculateNormalizedMoments.py nipype/algorithms/tests/test_auto_ComputeDVARS.py nipype/algorithms/tests/test_auto_ComputeMeshWarp.py nipype/algorithms/tests/test_auto_CreateNifti.py nipype/algorithms/tests/test_auto_Distance.py nipype/algorithms/tests/test_auto_FramewiseDisplacement.py nipype/algorithms/tests/test_auto_FuzzyOverlap.py nipype/algorithms/tests/test_auto_Gunzip.py nipype/algorithms/tests/test_auto_ICC.py nipype/algorithms/tests/test_auto_Matlab2CSV.py nipype/algorithms/tests/test_auto_MergeCSVFiles.py nipype/algorithms/tests/test_auto_MergeROIs.py nipype/algorithms/tests/test_auto_MeshWarpMaths.py nipype/algorithms/tests/test_auto_ModifyAffine.py nipype/algorithms/tests/test_auto_NonSteadyStateDetector.py nipype/algorithms/tests/test_auto_NormalizeProbabilityMapSet.py nipype/algorithms/tests/test_auto_P2PDistance.py nipype/algorithms/tests/test_auto_PickAtlas.py nipype/algorithms/tests/test_auto_Similarity.py nipype/algorithms/tests/test_auto_SimpleThreshold.py nipype/algorithms/tests/test_auto_SpecifyModel.py nipype/algorithms/tests/test_auto_SpecifySPMModel.py nipype/algorithms/tests/test_auto_SpecifySparseModel.py nipype/algorithms/tests/test_auto_SplitROIs.py nipype/algorithms/tests/test_auto_StimulusCorrelation.py nipype/algorithms/tests/test_auto_TCompCor.py nipype/algorithms/tests/test_auto_TVTKBaseInterface.py nipype/algorithms/tests/test_auto_WarpPoints.py nipype/algorithms/tests/test_confounds.py nipype/algorithms/tests/test_icc_anova.py nipype/algorithms/tests/test_mesh_ops.py nipype/algorithms/tests/test_metrics.py nipype/algorithms/tests/test_misc.py nipype/algorithms/tests/test_modelgen.py nipype/algorithms/tests/test_moments.py nipype/algorithms/tests/test_normalize_tpms.py nipype/algorithms/tests/test_rapidart.py nipype/algorithms/tests/test_splitmerge.py nipype/algorithms/tests/test_stats.py nipype/caching/__init__.py nipype/caching/memory.py nipype/caching/tests/__init__.py nipype/caching/tests/test_memory.py nipype/conftest.py nipype/external/__init__.py nipype/external/cloghandler.py nipype/external/d3.js nipype/external/due.py nipype/external/fsl_imglob.py nipype/info.py nipype/interfaces/__init__.py nipype/interfaces/afni/__init__.py nipype/interfaces/afni/base.py nipype/interfaces/afni/model.py nipype/interfaces/afni/preprocess.py nipype/interfaces/afni/svm.py nipype/interfaces/afni/tests/__init__.py nipype/interfaces/afni/tests/test_auto_ABoverlap.py nipype/interfaces/afni/tests/test_auto_AFNICommand.py nipype/interfaces/afni/tests/test_auto_AFNICommandBase.py nipype/interfaces/afni/tests/test_auto_AFNIPythonCommand.py nipype/interfaces/afni/tests/test_auto_AFNItoNIFTI.py nipype/interfaces/afni/tests/test_auto_AlignEpiAnatPy.py nipype/interfaces/afni/tests/test_auto_Allineate.py nipype/interfaces/afni/tests/test_auto_AutoTLRC.py nipype/interfaces/afni/tests/test_auto_AutoTcorrelate.py nipype/interfaces/afni/tests/test_auto_Autobox.py nipype/interfaces/afni/tests/test_auto_Automask.py nipype/interfaces/afni/tests/test_auto_Axialize.py nipype/interfaces/afni/tests/test_auto_Bandpass.py nipype/interfaces/afni/tests/test_auto_BlurInMask.py nipype/interfaces/afni/tests/test_auto_BlurToFWHM.py nipype/interfaces/afni/tests/test_auto_BrickStat.py nipype/interfaces/afni/tests/test_auto_Bucket.py nipype/interfaces/afni/tests/test_auto_Calc.py nipype/interfaces/afni/tests/test_auto_Cat.py nipype/interfaces/afni/tests/test_auto_CatMatvec.py nipype/interfaces/afni/tests/test_auto_CenterMass.py nipype/interfaces/afni/tests/test_auto_ClipLevel.py nipype/interfaces/afni/tests/test_auto_ConvertDset.py nipype/interfaces/afni/tests/test_auto_Copy.py nipype/interfaces/afni/tests/test_auto_Deconvolve.py nipype/interfaces/afni/tests/test_auto_DegreeCentrality.py nipype/interfaces/afni/tests/test_auto_Despike.py nipype/interfaces/afni/tests/test_auto_Detrend.py nipype/interfaces/afni/tests/test_auto_Dot.py nipype/interfaces/afni/tests/test_auto_ECM.py nipype/interfaces/afni/tests/test_auto_Edge3.py nipype/interfaces/afni/tests/test_auto_Eval.py nipype/interfaces/afni/tests/test_auto_FWHMx.py nipype/interfaces/afni/tests/test_auto_Fim.py nipype/interfaces/afni/tests/test_auto_Fourier.py nipype/interfaces/afni/tests/test_auto_GCOR.py nipype/interfaces/afni/tests/test_auto_Hist.py nipype/interfaces/afni/tests/test_auto_LFCD.py nipype/interfaces/afni/tests/test_auto_LocalBistat.py nipype/interfaces/afni/tests/test_auto_Localstat.py nipype/interfaces/afni/tests/test_auto_MaskTool.py nipype/interfaces/afni/tests/test_auto_Maskave.py nipype/interfaces/afni/tests/test_auto_Means.py nipype/interfaces/afni/tests/test_auto_Merge.py nipype/interfaces/afni/tests/test_auto_Notes.py nipype/interfaces/afni/tests/test_auto_NwarpAdjust.py nipype/interfaces/afni/tests/test_auto_NwarpApply.py nipype/interfaces/afni/tests/test_auto_NwarpCat.py nipype/interfaces/afni/tests/test_auto_OneDToolPy.py nipype/interfaces/afni/tests/test_auto_OutlierCount.py nipype/interfaces/afni/tests/test_auto_QualityIndex.py nipype/interfaces/afni/tests/test_auto_Qwarp.py nipype/interfaces/afni/tests/test_auto_QwarpPlusMinus.py nipype/interfaces/afni/tests/test_auto_ROIStats.py nipype/interfaces/afni/tests/test_auto_ReHo.py nipype/interfaces/afni/tests/test_auto_Refit.py nipype/interfaces/afni/tests/test_auto_Remlfit.py nipype/interfaces/afni/tests/test_auto_Resample.py nipype/interfaces/afni/tests/test_auto_Retroicor.py nipype/interfaces/afni/tests/test_auto_SVMTest.py nipype/interfaces/afni/tests/test_auto_SVMTrain.py nipype/interfaces/afni/tests/test_auto_Seg.py nipype/interfaces/afni/tests/test_auto_SkullStrip.py nipype/interfaces/afni/tests/test_auto_Synthesize.py nipype/interfaces/afni/tests/test_auto_TCat.py nipype/interfaces/afni/tests/test_auto_TCatSubBrick.py nipype/interfaces/afni/tests/test_auto_TCorr1D.py nipype/interfaces/afni/tests/test_auto_TCorrMap.py nipype/interfaces/afni/tests/test_auto_TCorrelate.py nipype/interfaces/afni/tests/test_auto_TNorm.py nipype/interfaces/afni/tests/test_auto_TProject.py nipype/interfaces/afni/tests/test_auto_TShift.py nipype/interfaces/afni/tests/test_auto_TSmooth.py nipype/interfaces/afni/tests/test_auto_TStat.py nipype/interfaces/afni/tests/test_auto_To3D.py nipype/interfaces/afni/tests/test_auto_Undump.py nipype/interfaces/afni/tests/test_auto_Unifize.py nipype/interfaces/afni/tests/test_auto_Volreg.py nipype/interfaces/afni/tests/test_auto_Warp.py nipype/interfaces/afni/tests/test_auto_ZCutUp.py nipype/interfaces/afni/tests/test_auto_Zcat.py nipype/interfaces/afni/tests/test_auto_Zeropad.py nipype/interfaces/afni/tests/test_extra_Deconvolve.py nipype/interfaces/afni/utils.py nipype/interfaces/ants/__init__.py nipype/interfaces/ants/base.py nipype/interfaces/ants/legacy.py nipype/interfaces/ants/registration.py nipype/interfaces/ants/resampling.py nipype/interfaces/ants/segmentation.py nipype/interfaces/ants/tests/__init__.py nipype/interfaces/ants/tests/test_auto_AI.py nipype/interfaces/ants/tests/test_auto_ANTS.py nipype/interfaces/ants/tests/test_auto_ANTSCommand.py nipype/interfaces/ants/tests/test_auto_AffineInitializer.py nipype/interfaces/ants/tests/test_auto_ApplyTransforms.py nipype/interfaces/ants/tests/test_auto_ApplyTransformsToPoints.py nipype/interfaces/ants/tests/test_auto_Atropos.py nipype/interfaces/ants/tests/test_auto_AverageAffineTransform.py nipype/interfaces/ants/tests/test_auto_AverageImages.py nipype/interfaces/ants/tests/test_auto_BrainExtraction.py nipype/interfaces/ants/tests/test_auto_ComposeMultiTransform.py nipype/interfaces/ants/tests/test_auto_CompositeTransformUtil.py nipype/interfaces/ants/tests/test_auto_ConvertScalarImageToRGB.py nipype/interfaces/ants/tests/test_auto_CorticalThickness.py nipype/interfaces/ants/tests/test_auto_CreateJacobianDeterminantImage.py nipype/interfaces/ants/tests/test_auto_CreateTiledMosaic.py nipype/interfaces/ants/tests/test_auto_DenoiseImage.py nipype/interfaces/ants/tests/test_auto_GenWarpFields.py nipype/interfaces/ants/tests/test_auto_ImageMath.py nipype/interfaces/ants/tests/test_auto_JointFusion.py nipype/interfaces/ants/tests/test_auto_KellyKapowski.py nipype/interfaces/ants/tests/test_auto_LabelGeometry.py nipype/interfaces/ants/tests/test_auto_LaplacianThickness.py nipype/interfaces/ants/tests/test_auto_MeasureImageSimilarity.py nipype/interfaces/ants/tests/test_auto_MultiplyImages.py nipype/interfaces/ants/tests/test_auto_N4BiasFieldCorrection.py nipype/interfaces/ants/tests/test_auto_Registration.py nipype/interfaces/ants/tests/test_auto_RegistrationSynQuick.py nipype/interfaces/ants/tests/test_auto_ResampleImageBySpacing.py nipype/interfaces/ants/tests/test_auto_ThresholdImage.py nipype/interfaces/ants/tests/test_auto_WarpImageMultiTransform.py nipype/interfaces/ants/tests/test_auto_WarpTimeSeriesImageMultiTransform.py nipype/interfaces/ants/tests/test_auto_antsIntroduction.py nipype/interfaces/ants/tests/test_auto_buildtemplateparallel.py nipype/interfaces/ants/tests/test_extra_Registration.py nipype/interfaces/ants/tests/test_resampling.py nipype/interfaces/ants/tests/test_segmentation.py nipype/interfaces/ants/utils.py nipype/interfaces/ants/visualization.py nipype/interfaces/base/__init__.py nipype/interfaces/base/core.py nipype/interfaces/base/specs.py nipype/interfaces/base/support.py nipype/interfaces/base/tests/__init__.py nipype/interfaces/base/tests/test_auto_BaseInterface.py nipype/interfaces/base/tests/test_auto_CommandLine.py nipype/interfaces/base/tests/test_auto_LibraryBaseInterface.py nipype/interfaces/base/tests/test_auto_MpiCommandLine.py nipype/interfaces/base/tests/test_auto_SEMLikeCommandLine.py nipype/interfaces/base/tests/test_auto_SimpleInterface.py nipype/interfaces/base/tests/test_auto_StdOutCommandLine.py nipype/interfaces/base/tests/test_core.py nipype/interfaces/base/tests/test_resource_monitor.py nipype/interfaces/base/tests/test_specs.py nipype/interfaces/base/tests/test_support.py nipype/interfaces/base/tests/test_traits_extension.py nipype/interfaces/base/traits_extension.py nipype/interfaces/brainsuite/__init__.py nipype/interfaces/brainsuite/brainsuite.py nipype/interfaces/brainsuite/tests/__init__.py nipype/interfaces/brainsuite/tests/test_auto_BDP.py nipype/interfaces/brainsuite/tests/test_auto_Bfc.py nipype/interfaces/brainsuite/tests/test_auto_Bse.py nipype/interfaces/brainsuite/tests/test_auto_Cerebro.py nipype/interfaces/brainsuite/tests/test_auto_Cortex.py nipype/interfaces/brainsuite/tests/test_auto_Dewisp.py nipype/interfaces/brainsuite/tests/test_auto_Dfs.py nipype/interfaces/brainsuite/tests/test_auto_Hemisplit.py nipype/interfaces/brainsuite/tests/test_auto_Pialmesh.py nipype/interfaces/brainsuite/tests/test_auto_Pvc.py nipype/interfaces/brainsuite/tests/test_auto_SVReg.py nipype/interfaces/brainsuite/tests/test_auto_Scrubmask.py nipype/interfaces/brainsuite/tests/test_auto_Skullfinder.py nipype/interfaces/brainsuite/tests/test_auto_Tca.py nipype/interfaces/brainsuite/tests/test_auto_ThicknessPVC.py nipype/interfaces/bru2nii.py nipype/interfaces/c3.py nipype/interfaces/camino/__init__.py nipype/interfaces/camino/calib.py nipype/interfaces/camino/connectivity.py nipype/interfaces/camino/convert.py nipype/interfaces/camino/dti.py nipype/interfaces/camino/odf.py nipype/interfaces/camino/tests/__init__.py nipype/interfaces/camino/tests/test_auto_AnalyzeHeader.py nipype/interfaces/camino/tests/test_auto_ComputeEigensystem.py nipype/interfaces/camino/tests/test_auto_ComputeFractionalAnisotropy.py nipype/interfaces/camino/tests/test_auto_ComputeMeanDiffusivity.py nipype/interfaces/camino/tests/test_auto_ComputeTensorTrace.py nipype/interfaces/camino/tests/test_auto_Conmat.py nipype/interfaces/camino/tests/test_auto_DT2NIfTI.py nipype/interfaces/camino/tests/test_auto_DTIFit.py nipype/interfaces/camino/tests/test_auto_DTLUTGen.py nipype/interfaces/camino/tests/test_auto_DTMetric.py nipype/interfaces/camino/tests/test_auto_FSL2Scheme.py nipype/interfaces/camino/tests/test_auto_Image2Voxel.py nipype/interfaces/camino/tests/test_auto_ImageStats.py nipype/interfaces/camino/tests/test_auto_LinRecon.py nipype/interfaces/camino/tests/test_auto_MESD.py nipype/interfaces/camino/tests/test_auto_ModelFit.py nipype/interfaces/camino/tests/test_auto_NIfTIDT2Camino.py nipype/interfaces/camino/tests/test_auto_PicoPDFs.py nipype/interfaces/camino/tests/test_auto_ProcStreamlines.py nipype/interfaces/camino/tests/test_auto_QBallMX.py nipype/interfaces/camino/tests/test_auto_SFLUTGen.py nipype/interfaces/camino/tests/test_auto_SFPICOCalibData.py nipype/interfaces/camino/tests/test_auto_SFPeaks.py nipype/interfaces/camino/tests/test_auto_Shredder.py nipype/interfaces/camino/tests/test_auto_Track.py nipype/interfaces/camino/tests/test_auto_TrackBallStick.py nipype/interfaces/camino/tests/test_auto_TrackBayesDirac.py nipype/interfaces/camino/tests/test_auto_TrackBedpostxDeter.py nipype/interfaces/camino/tests/test_auto_TrackBedpostxProba.py nipype/interfaces/camino/tests/test_auto_TrackBootstrap.py nipype/interfaces/camino/tests/test_auto_TrackDT.py nipype/interfaces/camino/tests/test_auto_TrackPICo.py nipype/interfaces/camino/tests/test_auto_TractShredder.py nipype/interfaces/camino/tests/test_auto_VtkStreamlines.py nipype/interfaces/camino/utils.py nipype/interfaces/camino2trackvis/__init__.py nipype/interfaces/camino2trackvis/convert.py nipype/interfaces/camino2trackvis/tests/__init__.py nipype/interfaces/camino2trackvis/tests/test_auto_Camino2Trackvis.py nipype/interfaces/camino2trackvis/tests/test_auto_Trackvis2Camino.py nipype/interfaces/cmtk/__init__.py nipype/interfaces/cmtk/base.py nipype/interfaces/cmtk/cmtk.py nipype/interfaces/cmtk/convert.py nipype/interfaces/cmtk/nbs.py nipype/interfaces/cmtk/nx.py nipype/interfaces/cmtk/parcellation.py nipype/interfaces/cmtk/tests/__init__.py nipype/interfaces/cmtk/tests/test_auto_AverageNetworks.py nipype/interfaces/cmtk/tests/test_auto_CFFBaseInterface.py nipype/interfaces/cmtk/tests/test_auto_CFFConverter.py nipype/interfaces/cmtk/tests/test_auto_CreateMatrix.py nipype/interfaces/cmtk/tests/test_auto_CreateNodes.py nipype/interfaces/cmtk/tests/test_auto_MergeCNetworks.py nipype/interfaces/cmtk/tests/test_auto_NetworkBasedStatistic.py nipype/interfaces/cmtk/tests/test_auto_NetworkXMetrics.py nipype/interfaces/cmtk/tests/test_auto_Parcellate.py nipype/interfaces/cmtk/tests/test_auto_ROIGen.py nipype/interfaces/cmtk/tests/test_nbs.py nipype/interfaces/dcm2nii.py nipype/interfaces/dcmstack.py nipype/interfaces/diffusion_toolkit/__init__.py nipype/interfaces/diffusion_toolkit/base.py nipype/interfaces/diffusion_toolkit/dti.py nipype/interfaces/diffusion_toolkit/odf.py nipype/interfaces/diffusion_toolkit/postproc.py nipype/interfaces/diffusion_toolkit/tests/__init__.py nipype/interfaces/diffusion_toolkit/tests/test_auto_DTIRecon.py nipype/interfaces/diffusion_toolkit/tests/test_auto_DTITracker.py nipype/interfaces/diffusion_toolkit/tests/test_auto_HARDIMat.py nipype/interfaces/diffusion_toolkit/tests/test_auto_ODFRecon.py nipype/interfaces/diffusion_toolkit/tests/test_auto_ODFTracker.py nipype/interfaces/diffusion_toolkit/tests/test_auto_SplineFilter.py nipype/interfaces/diffusion_toolkit/tests/test_auto_TrackMerge.py nipype/interfaces/dipy/__init__.py nipype/interfaces/dipy/anisotropic_power.py nipype/interfaces/dipy/base.py nipype/interfaces/dipy/preprocess.py nipype/interfaces/dipy/reconstruction.py nipype/interfaces/dipy/registration.py nipype/interfaces/dipy/setup.py nipype/interfaces/dipy/simulate.py nipype/interfaces/dipy/stats.py nipype/interfaces/dipy/tensors.py nipype/interfaces/dipy/tests/__init__.py nipype/interfaces/dipy/tests/test_auto_APMQball.py nipype/interfaces/dipy/tests/test_auto_CSD.py nipype/interfaces/dipy/tests/test_auto_DTI.py nipype/interfaces/dipy/tests/test_auto_Denoise.py nipype/interfaces/dipy/tests/test_auto_DipyBaseInterface.py nipype/interfaces/dipy/tests/test_auto_DipyDiffusionInterface.py nipype/interfaces/dipy/tests/test_auto_EstimateResponseSH.py nipype/interfaces/dipy/tests/test_auto_RESTORE.py nipype/interfaces/dipy/tests/test_auto_Resample.py nipype/interfaces/dipy/tests/test_auto_SimulateMultiTensor.py nipype/interfaces/dipy/tests/test_auto_StreamlineTractography.py nipype/interfaces/dipy/tests/test_auto_TensorMode.py nipype/interfaces/dipy/tests/test_auto_TrackDensityMap.py nipype/interfaces/dipy/tests/test_base.py nipype/interfaces/dipy/tracks.py nipype/interfaces/dtitk/__init__.py nipype/interfaces/dtitk/base.py nipype/interfaces/dtitk/registration.py nipype/interfaces/dtitk/tests/__init__.py nipype/interfaces/dtitk/tests/test_auto_AffScalarVol.py nipype/interfaces/dtitk/tests/test_auto_AffSymTensor3DVol.py nipype/interfaces/dtitk/tests/test_auto_Affine.py nipype/interfaces/dtitk/tests/test_auto_AffineTask.py nipype/interfaces/dtitk/tests/test_auto_BinThresh.py nipype/interfaces/dtitk/tests/test_auto_BinThreshTask.py nipype/interfaces/dtitk/tests/test_auto_CommandLineDtitk.py nipype/interfaces/dtitk/tests/test_auto_ComposeXfm.py nipype/interfaces/dtitk/tests/test_auto_ComposeXfmTask.py nipype/interfaces/dtitk/tests/test_auto_Diffeo.py nipype/interfaces/dtitk/tests/test_auto_DiffeoScalarVol.py nipype/interfaces/dtitk/tests/test_auto_DiffeoSymTensor3DVol.py nipype/interfaces/dtitk/tests/test_auto_DiffeoTask.py nipype/interfaces/dtitk/tests/test_auto_Rigid.py nipype/interfaces/dtitk/tests/test_auto_RigidTask.py nipype/interfaces/dtitk/tests/test_auto_SVAdjustVoxSp.py nipype/interfaces/dtitk/tests/test_auto_SVAdjustVoxSpTask.py nipype/interfaces/dtitk/tests/test_auto_SVResample.py nipype/interfaces/dtitk/tests/test_auto_SVResampleTask.py nipype/interfaces/dtitk/tests/test_auto_TVAdjustOriginTask.py nipype/interfaces/dtitk/tests/test_auto_TVAdjustVoxSp.py nipype/interfaces/dtitk/tests/test_auto_TVAdjustVoxSpTask.py nipype/interfaces/dtitk/tests/test_auto_TVResample.py nipype/interfaces/dtitk/tests/test_auto_TVResampleTask.py nipype/interfaces/dtitk/tests/test_auto_TVtool.py nipype/interfaces/dtitk/tests/test_auto_TVtoolTask.py nipype/interfaces/dtitk/tests/test_auto_affScalarVolTask.py nipype/interfaces/dtitk/tests/test_auto_affSymTensor3DVolTask.py nipype/interfaces/dtitk/tests/test_auto_diffeoScalarVolTask.py nipype/interfaces/dtitk/tests/test_auto_diffeoSymTensor3DVolTask.py nipype/interfaces/dtitk/utils.py nipype/interfaces/dynamic_slicer.py nipype/interfaces/elastix/__init__.py nipype/interfaces/elastix/base.py nipype/interfaces/elastix/registration.py nipype/interfaces/elastix/tests/__init__.py nipype/interfaces/elastix/tests/test_auto_AnalyzeWarp.py nipype/interfaces/elastix/tests/test_auto_ApplyWarp.py nipype/interfaces/elastix/tests/test_auto_EditTransform.py nipype/interfaces/elastix/tests/test_auto_PointsWarp.py nipype/interfaces/elastix/tests/test_auto_Registration.py nipype/interfaces/elastix/utils.py nipype/interfaces/freesurfer/__init__.py nipype/interfaces/freesurfer/base.py nipype/interfaces/freesurfer/longitudinal.py nipype/interfaces/freesurfer/model.py nipype/interfaces/freesurfer/preprocess.py nipype/interfaces/freesurfer/registration.py nipype/interfaces/freesurfer/tests/__init__.py nipype/interfaces/freesurfer/tests/test_BBRegister.py nipype/interfaces/freesurfer/tests/test_FSSurfaceCommand.py nipype/interfaces/freesurfer/tests/test_auto_AddXFormToHeader.py nipype/interfaces/freesurfer/tests/test_auto_Aparc2Aseg.py nipype/interfaces/freesurfer/tests/test_auto_Apas2Aseg.py nipype/interfaces/freesurfer/tests/test_auto_ApplyMask.py nipype/interfaces/freesurfer/tests/test_auto_ApplyVolTransform.py nipype/interfaces/freesurfer/tests/test_auto_Binarize.py nipype/interfaces/freesurfer/tests/test_auto_CALabel.py nipype/interfaces/freesurfer/tests/test_auto_CANormalize.py nipype/interfaces/freesurfer/tests/test_auto_CARegister.py nipype/interfaces/freesurfer/tests/test_auto_CheckTalairachAlignment.py nipype/interfaces/freesurfer/tests/test_auto_Concatenate.py nipype/interfaces/freesurfer/tests/test_auto_ConcatenateLTA.py nipype/interfaces/freesurfer/tests/test_auto_Contrast.py nipype/interfaces/freesurfer/tests/test_auto_Curvature.py nipype/interfaces/freesurfer/tests/test_auto_CurvatureStats.py nipype/interfaces/freesurfer/tests/test_auto_DICOMConvert.py nipype/interfaces/freesurfer/tests/test_auto_EMRegister.py nipype/interfaces/freesurfer/tests/test_auto_EditWMwithAseg.py nipype/interfaces/freesurfer/tests/test_auto_EulerNumber.py nipype/interfaces/freesurfer/tests/test_auto_ExtractMainComponent.py nipype/interfaces/freesurfer/tests/test_auto_FSCommand.py nipype/interfaces/freesurfer/tests/test_auto_FSCommandOpenMP.py nipype/interfaces/freesurfer/tests/test_auto_FSScriptCommand.py nipype/interfaces/freesurfer/tests/test_auto_FitMSParams.py nipype/interfaces/freesurfer/tests/test_auto_FixTopology.py nipype/interfaces/freesurfer/tests/test_auto_FuseSegmentations.py nipype/interfaces/freesurfer/tests/test_auto_GLMFit.py nipype/interfaces/freesurfer/tests/test_auto_ImageInfo.py nipype/interfaces/freesurfer/tests/test_auto_Jacobian.py nipype/interfaces/freesurfer/tests/test_auto_LTAConvert.py nipype/interfaces/freesurfer/tests/test_auto_Label2Annot.py nipype/interfaces/freesurfer/tests/test_auto_Label2Label.py nipype/interfaces/freesurfer/tests/test_auto_Label2Vol.py nipype/interfaces/freesurfer/tests/test_auto_MNIBiasCorrection.py nipype/interfaces/freesurfer/tests/test_auto_MPRtoMNI305.py nipype/interfaces/freesurfer/tests/test_auto_MRIConvert.py nipype/interfaces/freesurfer/tests/test_auto_MRICoreg.py nipype/interfaces/freesurfer/tests/test_auto_MRIFill.py nipype/interfaces/freesurfer/tests/test_auto_MRIMarchingCubes.py nipype/interfaces/freesurfer/tests/test_auto_MRIPretess.py nipype/interfaces/freesurfer/tests/test_auto_MRISPreproc.py nipype/interfaces/freesurfer/tests/test_auto_MRISPreprocReconAll.py nipype/interfaces/freesurfer/tests/test_auto_MRITessellate.py nipype/interfaces/freesurfer/tests/test_auto_MRIsCALabel.py nipype/interfaces/freesurfer/tests/test_auto_MRIsCalc.py nipype/interfaces/freesurfer/tests/test_auto_MRIsCombine.py nipype/interfaces/freesurfer/tests/test_auto_MRIsConvert.py nipype/interfaces/freesurfer/tests/test_auto_MRIsExpand.py nipype/interfaces/freesurfer/tests/test_auto_MRIsInflate.py nipype/interfaces/freesurfer/tests/test_auto_MS_LDA.py nipype/interfaces/freesurfer/tests/test_auto_MakeAverageSubject.py nipype/interfaces/freesurfer/tests/test_auto_MakeSurfaces.py nipype/interfaces/freesurfer/tests/test_auto_Normalize.py nipype/interfaces/freesurfer/tests/test_auto_OneSampleTTest.py nipype/interfaces/freesurfer/tests/test_auto_Paint.py nipype/interfaces/freesurfer/tests/test_auto_ParcellationStats.py nipype/interfaces/freesurfer/tests/test_auto_ParseDICOMDir.py nipype/interfaces/freesurfer/tests/test_auto_ReconAll.py nipype/interfaces/freesurfer/tests/test_auto_Register.py nipype/interfaces/freesurfer/tests/test_auto_RegisterAVItoTalairach.py nipype/interfaces/freesurfer/tests/test_auto_RelabelHypointensities.py nipype/interfaces/freesurfer/tests/test_auto_RemoveIntersection.py nipype/interfaces/freesurfer/tests/test_auto_RemoveNeck.py nipype/interfaces/freesurfer/tests/test_auto_Resample.py nipype/interfaces/freesurfer/tests/test_auto_RobustRegister.py nipype/interfaces/freesurfer/tests/test_auto_RobustTemplate.py nipype/interfaces/freesurfer/tests/test_auto_SampleToSurface.py nipype/interfaces/freesurfer/tests/test_auto_SegStats.py nipype/interfaces/freesurfer/tests/test_auto_SegStatsReconAll.py nipype/interfaces/freesurfer/tests/test_auto_SegmentCC.py nipype/interfaces/freesurfer/tests/test_auto_SegmentWM.py nipype/interfaces/freesurfer/tests/test_auto_Smooth.py nipype/interfaces/freesurfer/tests/test_auto_SmoothTessellation.py nipype/interfaces/freesurfer/tests/test_auto_Sphere.py nipype/interfaces/freesurfer/tests/test_auto_SphericalAverage.py nipype/interfaces/freesurfer/tests/test_auto_Surface2VolTransform.py nipype/interfaces/freesurfer/tests/test_auto_SurfaceSmooth.py nipype/interfaces/freesurfer/tests/test_auto_SurfaceSnapshots.py nipype/interfaces/freesurfer/tests/test_auto_SurfaceTransform.py nipype/interfaces/freesurfer/tests/test_auto_SynthesizeFLASH.py nipype/interfaces/freesurfer/tests/test_auto_TalairachAVI.py nipype/interfaces/freesurfer/tests/test_auto_TalairachQC.py nipype/interfaces/freesurfer/tests/test_auto_Tkregister2.py nipype/interfaces/freesurfer/tests/test_auto_UnpackSDICOMDir.py nipype/interfaces/freesurfer/tests/test_auto_VolumeMask.py nipype/interfaces/freesurfer/tests/test_auto_WatershedSkullStrip.py nipype/interfaces/freesurfer/tests/test_model.py nipype/interfaces/freesurfer/tests/test_preprocess.py nipype/interfaces/freesurfer/tests/test_utils.py nipype/interfaces/freesurfer/utils.py nipype/interfaces/fsl/__init__.py nipype/interfaces/fsl/aroma.py nipype/interfaces/fsl/base.py nipype/interfaces/fsl/dti.py nipype/interfaces/fsl/epi.py nipype/interfaces/fsl/fix.py nipype/interfaces/fsl/maths.py nipype/interfaces/fsl/model.py nipype/interfaces/fsl/model_templates/feat_contrast_element.tcl nipype/interfaces/fsl/model_templates/feat_contrast_ftest_element.tcl nipype/interfaces/fsl/model_templates/feat_contrast_header.tcl nipype/interfaces/fsl/model_templates/feat_contrast_prolog.tcl nipype/interfaces/fsl/model_templates/feat_contrastmask_element.tcl nipype/interfaces/fsl/model_templates/feat_contrastmask_footer.tcl nipype/interfaces/fsl/model_templates/feat_contrastmask_header.tcl nipype/interfaces/fsl/model_templates/feat_contrasts.tcl nipype/interfaces/fsl/model_templates/feat_ev_custom.tcl nipype/interfaces/fsl/model_templates/feat_ev_gamma.tcl nipype/interfaces/fsl/model_templates/feat_ev_hrf.tcl nipype/interfaces/fsl/model_templates/feat_ev_none.tcl nipype/interfaces/fsl/model_templates/feat_ev_ortho.tcl nipype/interfaces/fsl/model_templates/feat_fe_copes.tcl nipype/interfaces/fsl/model_templates/feat_fe_ev_element.tcl nipype/interfaces/fsl/model_templates/feat_fe_ev_header.tcl nipype/interfaces/fsl/model_templates/feat_fe_featdirs.tcl nipype/interfaces/fsl/model_templates/feat_fe_footer.tcl nipype/interfaces/fsl/model_templates/feat_fe_header.tcl nipype/interfaces/fsl/model_templates/feat_header.tcl nipype/interfaces/fsl/model_templates/feat_header_l1.tcl nipype/interfaces/fsl/model_templates/feat_nongui.tcl nipype/interfaces/fsl/model_templates/featreg_header.tcl nipype/interfaces/fsl/possum.py nipype/interfaces/fsl/preprocess.py nipype/interfaces/fsl/tests/__init__.py nipype/interfaces/fsl/tests/test_FILMGLS.py nipype/interfaces/fsl/tests/test_Level1Design_functions.py nipype/interfaces/fsl/tests/test_auto_AR1Image.py nipype/interfaces/fsl/tests/test_auto_AccuracyTester.py nipype/interfaces/fsl/tests/test_auto_ApplyMask.py nipype/interfaces/fsl/tests/test_auto_ApplyTOPUP.py nipype/interfaces/fsl/tests/test_auto_ApplyWarp.py nipype/interfaces/fsl/tests/test_auto_ApplyXFM.py nipype/interfaces/fsl/tests/test_auto_AvScale.py nipype/interfaces/fsl/tests/test_auto_B0Calc.py nipype/interfaces/fsl/tests/test_auto_BEDPOSTX5.py nipype/interfaces/fsl/tests/test_auto_BET.py nipype/interfaces/fsl/tests/test_auto_BinaryMaths.py nipype/interfaces/fsl/tests/test_auto_ChangeDataType.py nipype/interfaces/fsl/tests/test_auto_Classifier.py nipype/interfaces/fsl/tests/test_auto_Cleaner.py nipype/interfaces/fsl/tests/test_auto_Cluster.py nipype/interfaces/fsl/tests/test_auto_Complex.py nipype/interfaces/fsl/tests/test_auto_ContrastMgr.py nipype/interfaces/fsl/tests/test_auto_ConvertWarp.py nipype/interfaces/fsl/tests/test_auto_ConvertXFM.py nipype/interfaces/fsl/tests/test_auto_CopyGeom.py nipype/interfaces/fsl/tests/test_auto_DTIFit.py nipype/interfaces/fsl/tests/test_auto_DilateImage.py nipype/interfaces/fsl/tests/test_auto_DistanceMap.py nipype/interfaces/fsl/tests/test_auto_DualRegression.py nipype/interfaces/fsl/tests/test_auto_EPIDeWarp.py nipype/interfaces/fsl/tests/test_auto_Eddy.py nipype/interfaces/fsl/tests/test_auto_EddyCorrect.py nipype/interfaces/fsl/tests/test_auto_EddyQuad.py nipype/interfaces/fsl/tests/test_auto_EpiReg.py nipype/interfaces/fsl/tests/test_auto_ErodeImage.py nipype/interfaces/fsl/tests/test_auto_ExtractROI.py nipype/interfaces/fsl/tests/test_auto_FAST.py nipype/interfaces/fsl/tests/test_auto_FEAT.py nipype/interfaces/fsl/tests/test_auto_FEATModel.py nipype/interfaces/fsl/tests/test_auto_FEATRegister.py nipype/interfaces/fsl/tests/test_auto_FIRST.py nipype/interfaces/fsl/tests/test_auto_FLAMEO.py nipype/interfaces/fsl/tests/test_auto_FLIRT.py nipype/interfaces/fsl/tests/test_auto_FNIRT.py nipype/interfaces/fsl/tests/test_auto_FSLCommand.py nipype/interfaces/fsl/tests/test_auto_FSLXCommand.py nipype/interfaces/fsl/tests/test_auto_FUGUE.py nipype/interfaces/fsl/tests/test_auto_FeatureExtractor.py nipype/interfaces/fsl/tests/test_auto_FilterRegressor.py nipype/interfaces/fsl/tests/test_auto_FindTheBiggest.py nipype/interfaces/fsl/tests/test_auto_GLM.py nipype/interfaces/fsl/tests/test_auto_ICA_AROMA.py nipype/interfaces/fsl/tests/test_auto_ImageMaths.py nipype/interfaces/fsl/tests/test_auto_ImageMeants.py nipype/interfaces/fsl/tests/test_auto_ImageStats.py nipype/interfaces/fsl/tests/test_auto_InvWarp.py nipype/interfaces/fsl/tests/test_auto_IsotropicSmooth.py nipype/interfaces/fsl/tests/test_auto_L2Model.py nipype/interfaces/fsl/tests/test_auto_Level1Design.py nipype/interfaces/fsl/tests/test_auto_MCFLIRT.py nipype/interfaces/fsl/tests/test_auto_MELODIC.py nipype/interfaces/fsl/tests/test_auto_MakeDyadicVectors.py nipype/interfaces/fsl/tests/test_auto_MathsCommand.py nipype/interfaces/fsl/tests/test_auto_MaxImage.py nipype/interfaces/fsl/tests/test_auto_MaxnImage.py nipype/interfaces/fsl/tests/test_auto_MeanImage.py nipype/interfaces/fsl/tests/test_auto_MedianImage.py nipype/interfaces/fsl/tests/test_auto_Merge.py nipype/interfaces/fsl/tests/test_auto_MinImage.py nipype/interfaces/fsl/tests/test_auto_MotionOutliers.py nipype/interfaces/fsl/tests/test_auto_MultiImageMaths.py nipype/interfaces/fsl/tests/test_auto_MultipleRegressDesign.py nipype/interfaces/fsl/tests/test_auto_Overlay.py nipype/interfaces/fsl/tests/test_auto_PRELUDE.py nipype/interfaces/fsl/tests/test_auto_PercentileImage.py nipype/interfaces/fsl/tests/test_auto_PlotMotionParams.py nipype/interfaces/fsl/tests/test_auto_PlotTimeSeries.py nipype/interfaces/fsl/tests/test_auto_PowerSpectrum.py nipype/interfaces/fsl/tests/test_auto_PrepareFieldmap.py nipype/interfaces/fsl/tests/test_auto_ProbTrackX.py nipype/interfaces/fsl/tests/test_auto_ProbTrackX2.py nipype/interfaces/fsl/tests/test_auto_ProjThresh.py nipype/interfaces/fsl/tests/test_auto_Randomise.py nipype/interfaces/fsl/tests/test_auto_Reorient2Std.py nipype/interfaces/fsl/tests/test_auto_RobustFOV.py nipype/interfaces/fsl/tests/test_auto_SMM.py nipype/interfaces/fsl/tests/test_auto_SUSAN.py nipype/interfaces/fsl/tests/test_auto_SigLoss.py nipype/interfaces/fsl/tests/test_auto_Slice.py nipype/interfaces/fsl/tests/test_auto_SliceTimer.py nipype/interfaces/fsl/tests/test_auto_Slicer.py nipype/interfaces/fsl/tests/test_auto_Smooth.py nipype/interfaces/fsl/tests/test_auto_SmoothEstimate.py nipype/interfaces/fsl/tests/test_auto_SpatialFilter.py nipype/interfaces/fsl/tests/test_auto_Split.py nipype/interfaces/fsl/tests/test_auto_StdImage.py nipype/interfaces/fsl/tests/test_auto_SwapDimensions.py nipype/interfaces/fsl/tests/test_auto_TOPUP.py nipype/interfaces/fsl/tests/test_auto_TemporalFilter.py nipype/interfaces/fsl/tests/test_auto_Threshold.py nipype/interfaces/fsl/tests/test_auto_TractSkeleton.py nipype/interfaces/fsl/tests/test_auto_Training.py nipype/interfaces/fsl/tests/test_auto_TrainingSetCreator.py nipype/interfaces/fsl/tests/test_auto_UnaryMaths.py nipype/interfaces/fsl/tests/test_auto_VecReg.py nipype/interfaces/fsl/tests/test_auto_WarpPoints.py nipype/interfaces/fsl/tests/test_auto_WarpPointsFromStd.py nipype/interfaces/fsl/tests/test_auto_WarpPointsToStd.py nipype/interfaces/fsl/tests/test_auto_WarpUtils.py nipype/interfaces/fsl/tests/test_auto_XFibres5.py nipype/interfaces/fsl/tests/test_base.py nipype/interfaces/fsl/tests/test_dti.py nipype/interfaces/fsl/tests/test_epi.py nipype/interfaces/fsl/tests/test_maths.py nipype/interfaces/fsl/tests/test_model.py nipype/interfaces/fsl/tests/test_preprocess.py nipype/interfaces/fsl/tests/test_utils.py nipype/interfaces/fsl/utils.py nipype/interfaces/image.py nipype/interfaces/io.py nipype/interfaces/matlab.py nipype/interfaces/meshfix.py nipype/interfaces/minc/__init__.py nipype/interfaces/minc/base.py nipype/interfaces/minc/minc.py nipype/interfaces/minc/testdata.py nipype/interfaces/minc/tests/__init__.py nipype/interfaces/minc/tests/test_auto_Average.py nipype/interfaces/minc/tests/test_auto_BBox.py nipype/interfaces/minc/tests/test_auto_Beast.py nipype/interfaces/minc/tests/test_auto_BestLinReg.py nipype/interfaces/minc/tests/test_auto_BigAverage.py nipype/interfaces/minc/tests/test_auto_Blob.py nipype/interfaces/minc/tests/test_auto_Blur.py nipype/interfaces/minc/tests/test_auto_Calc.py nipype/interfaces/minc/tests/test_auto_Convert.py nipype/interfaces/minc/tests/test_auto_Copy.py nipype/interfaces/minc/tests/test_auto_Dump.py nipype/interfaces/minc/tests/test_auto_Extract.py nipype/interfaces/minc/tests/test_auto_Gennlxfm.py nipype/interfaces/minc/tests/test_auto_Math.py nipype/interfaces/minc/tests/test_auto_NlpFit.py nipype/interfaces/minc/tests/test_auto_Norm.py nipype/interfaces/minc/tests/test_auto_Pik.py nipype/interfaces/minc/tests/test_auto_Resample.py nipype/interfaces/minc/tests/test_auto_Reshape.py nipype/interfaces/minc/tests/test_auto_ToEcat.py nipype/interfaces/minc/tests/test_auto_ToRaw.py nipype/interfaces/minc/tests/test_auto_VolSymm.py nipype/interfaces/minc/tests/test_auto_Volcentre.py nipype/interfaces/minc/tests/test_auto_Voliso.py nipype/interfaces/minc/tests/test_auto_Volpad.py nipype/interfaces/minc/tests/test_auto_XfmAvg.py nipype/interfaces/minc/tests/test_auto_XfmConcat.py nipype/interfaces/minc/tests/test_auto_XfmInvert.py nipype/interfaces/mipav/__init__.py nipype/interfaces/mipav/developer.py nipype/interfaces/mipav/generate_classes.py nipype/interfaces/mipav/tests/__init__.py nipype/interfaces/mipav/tests/test_auto_JistBrainMgdmSegmentation.py nipype/interfaces/mipav/tests/test_auto_JistBrainMp2rageDuraEstimation.py nipype/interfaces/mipav/tests/test_auto_JistBrainMp2rageSkullStripping.py nipype/interfaces/mipav/tests/test_auto_JistBrainPartialVolumeFilter.py nipype/interfaces/mipav/tests/test_auto_JistCortexSurfaceMeshInflation.py nipype/interfaces/mipav/tests/test_auto_JistIntensityMp2rageMasking.py nipype/interfaces/mipav/tests/test_auto_JistLaminarProfileCalculator.py nipype/interfaces/mipav/tests/test_auto_JistLaminarProfileGeometry.py nipype/interfaces/mipav/tests/test_auto_JistLaminarProfileSampling.py nipype/interfaces/mipav/tests/test_auto_JistLaminarROIAveraging.py nipype/interfaces/mipav/tests/test_auto_JistLaminarVolumetricLayering.py nipype/interfaces/mipav/tests/test_auto_MedicAlgorithmImageCalculator.py nipype/interfaces/mipav/tests/test_auto_MedicAlgorithmLesionToads.py nipype/interfaces/mipav/tests/test_auto_MedicAlgorithmMipavReorient.py nipype/interfaces/mipav/tests/test_auto_MedicAlgorithmN3.py nipype/interfaces/mipav/tests/test_auto_MedicAlgorithmSPECTRE2010.py nipype/interfaces/mipav/tests/test_auto_MedicAlgorithmThresholdToBinaryMask.py nipype/interfaces/mipav/tests/test_auto_RandomVol.py nipype/interfaces/mixins/__init__.py nipype/interfaces/mixins/fixheader.py nipype/interfaces/mixins/reporting.py nipype/interfaces/mixins/tests/__init__.py nipype/interfaces/mixins/tests/test_auto_CopyHeaderInterface.py nipype/interfaces/mixins/tests/test_auto_ReportCapableInterface.py nipype/interfaces/mne/__init__.py nipype/interfaces/mne/base.py nipype/interfaces/mne/tests/__init__.py nipype/interfaces/mne/tests/test_auto_WatershedBEM.py nipype/interfaces/mrtrix/__init__.py nipype/interfaces/mrtrix/convert.py nipype/interfaces/mrtrix/defhdr.mat nipype/interfaces/mrtrix/preprocess.py nipype/interfaces/mrtrix/tensors.py nipype/interfaces/mrtrix/tests/__init__.py nipype/interfaces/mrtrix/tests/test_auto_ConstrainedSphericalDeconvolution.py nipype/interfaces/mrtrix/tests/test_auto_DWI2SphericalHarmonicsImage.py nipype/interfaces/mrtrix/tests/test_auto_DWI2Tensor.py nipype/interfaces/mrtrix/tests/test_auto_DiffusionTensorStreamlineTrack.py nipype/interfaces/mrtrix/tests/test_auto_Directions2Amplitude.py nipype/interfaces/mrtrix/tests/test_auto_Erode.py nipype/interfaces/mrtrix/tests/test_auto_EstimateResponseForSH.py nipype/interfaces/mrtrix/tests/test_auto_FSL2MRTrix.py nipype/interfaces/mrtrix/tests/test_auto_FilterTracks.py nipype/interfaces/mrtrix/tests/test_auto_FindShPeaks.py nipype/interfaces/mrtrix/tests/test_auto_GenerateDirections.py nipype/interfaces/mrtrix/tests/test_auto_GenerateWhiteMatterMask.py nipype/interfaces/mrtrix/tests/test_auto_MRConvert.py nipype/interfaces/mrtrix/tests/test_auto_MRMultiply.py nipype/interfaces/mrtrix/tests/test_auto_MRTransform.py nipype/interfaces/mrtrix/tests/test_auto_MRTrix2TrackVis.py nipype/interfaces/mrtrix/tests/test_auto_MRTrixInfo.py nipype/interfaces/mrtrix/tests/test_auto_MRTrixViewer.py nipype/interfaces/mrtrix/tests/test_auto_MedianFilter3D.py nipype/interfaces/mrtrix/tests/test_auto_ProbabilisticSphericallyDeconvolutedStreamlineTrack.py nipype/interfaces/mrtrix/tests/test_auto_SphericallyDeconvolutedStreamlineTrack.py nipype/interfaces/mrtrix/tests/test_auto_StreamlineTrack.py nipype/interfaces/mrtrix/tests/test_auto_Tensor2ApparentDiffusion.py nipype/interfaces/mrtrix/tests/test_auto_Tensor2FractionalAnisotropy.py nipype/interfaces/mrtrix/tests/test_auto_Tensor2Vector.py nipype/interfaces/mrtrix/tests/test_auto_Threshold.py nipype/interfaces/mrtrix/tests/test_auto_Tracks2Prob.py nipype/interfaces/mrtrix/tracking.py nipype/interfaces/mrtrix3/__init__.py nipype/interfaces/mrtrix3/base.py nipype/interfaces/mrtrix3/connectivity.py nipype/interfaces/mrtrix3/preprocess.py nipype/interfaces/mrtrix3/reconst.py nipype/interfaces/mrtrix3/tests/__init__.py nipype/interfaces/mrtrix3/tests/test_auto_ACTPrepareFSL.py nipype/interfaces/mrtrix3/tests/test_auto_BrainMask.py nipype/interfaces/mrtrix3/tests/test_auto_BuildConnectome.py nipype/interfaces/mrtrix3/tests/test_auto_ComputeTDI.py nipype/interfaces/mrtrix3/tests/test_auto_ConstrainedSphericalDeconvolution.py nipype/interfaces/mrtrix3/tests/test_auto_DWIBiasCorrect.py nipype/interfaces/mrtrix3/tests/test_auto_DWIDenoise.py nipype/interfaces/mrtrix3/tests/test_auto_DWIExtract.py nipype/interfaces/mrtrix3/tests/test_auto_EstimateFOD.py nipype/interfaces/mrtrix3/tests/test_auto_FitTensor.py nipype/interfaces/mrtrix3/tests/test_auto_Generate5tt.py nipype/interfaces/mrtrix3/tests/test_auto_LabelConfig.py nipype/interfaces/mrtrix3/tests/test_auto_LabelConvert.py nipype/interfaces/mrtrix3/tests/test_auto_MRConvert.py nipype/interfaces/mrtrix3/tests/test_auto_MRDeGibbs.py nipype/interfaces/mrtrix3/tests/test_auto_MRMath.py nipype/interfaces/mrtrix3/tests/test_auto_MRResize.py nipype/interfaces/mrtrix3/tests/test_auto_MRTrix3Base.py nipype/interfaces/mrtrix3/tests/test_auto_Mesh2PVE.py nipype/interfaces/mrtrix3/tests/test_auto_ReplaceFSwithFIRST.py nipype/interfaces/mrtrix3/tests/test_auto_ResponseSD.py nipype/interfaces/mrtrix3/tests/test_auto_TCK2VTK.py nipype/interfaces/mrtrix3/tests/test_auto_TensorMetrics.py nipype/interfaces/mrtrix3/tests/test_auto_Tractography.py nipype/interfaces/mrtrix3/tracking.py nipype/interfaces/mrtrix3/utils.py nipype/interfaces/niftyfit/__init__.py nipype/interfaces/niftyfit/asl.py nipype/interfaces/niftyfit/base.py nipype/interfaces/niftyfit/dwi.py nipype/interfaces/niftyfit/qt1.py nipype/interfaces/niftyfit/tests/__init__.py nipype/interfaces/niftyfit/tests/test_asl.py nipype/interfaces/niftyfit/tests/test_auto_DwiTool.py nipype/interfaces/niftyfit/tests/test_auto_FitAsl.py nipype/interfaces/niftyfit/tests/test_auto_FitDwi.py nipype/interfaces/niftyfit/tests/test_auto_FitQt1.py nipype/interfaces/niftyfit/tests/test_auto_NiftyFitCommand.py nipype/interfaces/niftyfit/tests/test_dwi.py nipype/interfaces/niftyfit/tests/test_qt1.py nipype/interfaces/niftyreg/__init__.py nipype/interfaces/niftyreg/base.py nipype/interfaces/niftyreg/reg.py nipype/interfaces/niftyreg/regutils.py nipype/interfaces/niftyreg/tests/__init__.py nipype/interfaces/niftyreg/tests/test_auto_NiftyRegCommand.py nipype/interfaces/niftyreg/tests/test_auto_RegAladin.py nipype/interfaces/niftyreg/tests/test_auto_RegAverage.py nipype/interfaces/niftyreg/tests/test_auto_RegF3D.py nipype/interfaces/niftyreg/tests/test_auto_RegJacobian.py nipype/interfaces/niftyreg/tests/test_auto_RegMeasure.py nipype/interfaces/niftyreg/tests/test_auto_RegResample.py nipype/interfaces/niftyreg/tests/test_auto_RegTools.py nipype/interfaces/niftyreg/tests/test_auto_RegTransform.py nipype/interfaces/niftyreg/tests/test_reg.py nipype/interfaces/niftyreg/tests/test_regutils.py nipype/interfaces/niftyseg/__init__.py nipype/interfaces/niftyseg/base.py nipype/interfaces/niftyseg/em.py nipype/interfaces/niftyseg/label_fusion.py nipype/interfaces/niftyseg/lesions.py nipype/interfaces/niftyseg/maths.py nipype/interfaces/niftyseg/patchmatch.py nipype/interfaces/niftyseg/stats.py nipype/interfaces/niftyseg/tests/__init__.py nipype/interfaces/niftyseg/tests/test_auto_BinaryMaths.py nipype/interfaces/niftyseg/tests/test_auto_BinaryMathsInteger.py nipype/interfaces/niftyseg/tests/test_auto_BinaryStats.py nipype/interfaces/niftyseg/tests/test_auto_CalcTopNCC.py nipype/interfaces/niftyseg/tests/test_auto_EM.py nipype/interfaces/niftyseg/tests/test_auto_FillLesions.py nipype/interfaces/niftyseg/tests/test_auto_LabelFusion.py nipype/interfaces/niftyseg/tests/test_auto_MathsCommand.py nipype/interfaces/niftyseg/tests/test_auto_Merge.py nipype/interfaces/niftyseg/tests/test_auto_NiftySegCommand.py nipype/interfaces/niftyseg/tests/test_auto_PatchMatch.py nipype/interfaces/niftyseg/tests/test_auto_StatsCommand.py nipype/interfaces/niftyseg/tests/test_auto_TupleMaths.py nipype/interfaces/niftyseg/tests/test_auto_UnaryMaths.py nipype/interfaces/niftyseg/tests/test_auto_UnaryStats.py nipype/interfaces/niftyseg/tests/test_em_interfaces.py nipype/interfaces/niftyseg/tests/test_extra_PatchMatch.py nipype/interfaces/niftyseg/tests/test_label_fusion.py nipype/interfaces/niftyseg/tests/test_lesions.py nipype/interfaces/niftyseg/tests/test_maths.py nipype/interfaces/niftyseg/tests/test_stats.py nipype/interfaces/nilearn.py nipype/interfaces/nipy/__init__.py nipype/interfaces/nipy/base.py nipype/interfaces/nipy/model.py nipype/interfaces/nipy/preprocess.py nipype/interfaces/nipy/tests/__init__.py nipype/interfaces/nipy/tests/test_auto_ComputeMask.py nipype/interfaces/nipy/tests/test_auto_EstimateContrast.py nipype/interfaces/nipy/tests/test_auto_FitGLM.py nipype/interfaces/nipy/tests/test_auto_NipyBaseInterface.py nipype/interfaces/nipy/tests/test_auto_Similarity.py nipype/interfaces/nipy/tests/test_auto_SpaceTimeRealigner.py nipype/interfaces/nipy/tests/test_auto_Trim.py nipype/interfaces/nipy/utils.py nipype/interfaces/nitime/__init__.py nipype/interfaces/nitime/analysis.py nipype/interfaces/nitime/base.py nipype/interfaces/nitime/tests/__init__.py nipype/interfaces/nitime/tests/test_auto_CoherenceAnalyzer.py nipype/interfaces/nitime/tests/test_auto_NitimeBaseInterface.py nipype/interfaces/nitime/tests/test_nitime.py nipype/interfaces/petpvc.py nipype/interfaces/quickshear.py nipype/interfaces/semtools/__init__.py nipype/interfaces/semtools/brains/__init__.py nipype/interfaces/semtools/brains/classify.py nipype/interfaces/semtools/brains/segmentation.py nipype/interfaces/semtools/brains/tests/__init__.py nipype/interfaces/semtools/brains/tests/test_auto_BRAINSPosteriorToContinuousClass.py nipype/interfaces/semtools/brains/tests/test_auto_BRAINSTalairach.py nipype/interfaces/semtools/brains/tests/test_auto_BRAINSTalairachMask.py nipype/interfaces/semtools/brains/tests/test_auto_GenerateEdgeMapImage.py nipype/interfaces/semtools/brains/tests/test_auto_GeneratePurePlugMask.py nipype/interfaces/semtools/brains/tests/test_auto_HistogramMatchingFilter.py nipype/interfaces/semtools/brains/tests/test_auto_SimilarityIndex.py nipype/interfaces/semtools/brains/utilities.py nipype/interfaces/semtools/converters.py nipype/interfaces/semtools/diffusion/__init__.py nipype/interfaces/semtools/diffusion/diffusion.py nipype/interfaces/semtools/diffusion/gtract.py nipype/interfaces/semtools/diffusion/maxcurvature.py nipype/interfaces/semtools/diffusion/tests/__init__.py nipype/interfaces/semtools/diffusion/tests/test_auto_DWIConvert.py nipype/interfaces/semtools/diffusion/tests/test_auto_compareTractInclusion.py nipype/interfaces/semtools/diffusion/tests/test_auto_dtiaverage.py nipype/interfaces/semtools/diffusion/tests/test_auto_dtiestim.py nipype/interfaces/semtools/diffusion/tests/test_auto_dtiprocess.py nipype/interfaces/semtools/diffusion/tests/test_auto_extractNrrdVectorIndex.py nipype/interfaces/semtools/diffusion/tests/test_auto_gtractAnisotropyMap.py nipype/interfaces/semtools/diffusion/tests/test_auto_gtractAverageBvalues.py nipype/interfaces/semtools/diffusion/tests/test_auto_gtractClipAnisotropy.py nipype/interfaces/semtools/diffusion/tests/test_auto_gtractCoRegAnatomy.py nipype/interfaces/semtools/diffusion/tests/test_auto_gtractConcatDwi.py nipype/interfaces/semtools/diffusion/tests/test_auto_gtractCopyImageOrientation.py nipype/interfaces/semtools/diffusion/tests/test_auto_gtractCoregBvalues.py nipype/interfaces/semtools/diffusion/tests/test_auto_gtractCostFastMarching.py nipype/interfaces/semtools/diffusion/tests/test_auto_gtractCreateGuideFiber.py nipype/interfaces/semtools/diffusion/tests/test_auto_gtractFastMarchingTracking.py nipype/interfaces/semtools/diffusion/tests/test_auto_gtractFiberTracking.py nipype/interfaces/semtools/diffusion/tests/test_auto_gtractImageConformity.py nipype/interfaces/semtools/diffusion/tests/test_auto_gtractInvertBSplineTransform.py nipype/interfaces/semtools/diffusion/tests/test_auto_gtractInvertDisplacementField.py nipype/interfaces/semtools/diffusion/tests/test_auto_gtractInvertRigidTransform.py nipype/interfaces/semtools/diffusion/tests/test_auto_gtractResampleAnisotropy.py nipype/interfaces/semtools/diffusion/tests/test_auto_gtractResampleB0.py nipype/interfaces/semtools/diffusion/tests/test_auto_gtractResampleCodeImage.py nipype/interfaces/semtools/diffusion/tests/test_auto_gtractResampleDWIInPlace.py nipype/interfaces/semtools/diffusion/tests/test_auto_gtractResampleFibers.py nipype/interfaces/semtools/diffusion/tests/test_auto_gtractTensor.py nipype/interfaces/semtools/diffusion/tests/test_auto_gtractTransformToDisplacementField.py nipype/interfaces/semtools/diffusion/tests/test_auto_maxcurvature.py nipype/interfaces/semtools/diffusion/tractography/__init__.py nipype/interfaces/semtools/diffusion/tractography/commandlineonly.py nipype/interfaces/semtools/diffusion/tractography/fiberprocess.py nipype/interfaces/semtools/diffusion/tractography/fibertrack.py nipype/interfaces/semtools/diffusion/tractography/tests/__init__.py nipype/interfaces/semtools/diffusion/tractography/tests/test_auto_UKFTractography.py nipype/interfaces/semtools/diffusion/tractography/tests/test_auto_fiberprocess.py nipype/interfaces/semtools/diffusion/tractography/tests/test_auto_fiberstats.py nipype/interfaces/semtools/diffusion/tractography/tests/test_auto_fibertrack.py nipype/interfaces/semtools/diffusion/tractography/ukftractography.py nipype/interfaces/semtools/featurecreator.py nipype/interfaces/semtools/filtering/__init__.py nipype/interfaces/semtools/filtering/denoising.py nipype/interfaces/semtools/filtering/featuredetection.py nipype/interfaces/semtools/filtering/tests/__init__.py nipype/interfaces/semtools/filtering/tests/test_auto_CannyEdge.py nipype/interfaces/semtools/filtering/tests/test_auto_CannySegmentationLevelSetImageFilter.py nipype/interfaces/semtools/filtering/tests/test_auto_DilateImage.py nipype/interfaces/semtools/filtering/tests/test_auto_DilateMask.py nipype/interfaces/semtools/filtering/tests/test_auto_DistanceMaps.py nipype/interfaces/semtools/filtering/tests/test_auto_DumpBinaryTrainingVectors.py nipype/interfaces/semtools/filtering/tests/test_auto_ErodeImage.py nipype/interfaces/semtools/filtering/tests/test_auto_FlippedDifference.py nipype/interfaces/semtools/filtering/tests/test_auto_GenerateBrainClippedImage.py nipype/interfaces/semtools/filtering/tests/test_auto_GenerateSummedGradientImage.py nipype/interfaces/semtools/filtering/tests/test_auto_GenerateTestImage.py nipype/interfaces/semtools/filtering/tests/test_auto_GradientAnisotropicDiffusionImageFilter.py nipype/interfaces/semtools/filtering/tests/test_auto_HammerAttributeCreator.py nipype/interfaces/semtools/filtering/tests/test_auto_NeighborhoodMean.py nipype/interfaces/semtools/filtering/tests/test_auto_NeighborhoodMedian.py nipype/interfaces/semtools/filtering/tests/test_auto_STAPLEAnalysis.py nipype/interfaces/semtools/filtering/tests/test_auto_TextureFromNoiseImageFilter.py nipype/interfaces/semtools/filtering/tests/test_auto_TextureMeasureFilter.py nipype/interfaces/semtools/filtering/tests/test_auto_UnbiasedNonLocalMeans.py nipype/interfaces/semtools/generated.sh nipype/interfaces/semtools/legacy/__init__.py nipype/interfaces/semtools/legacy/registration.py nipype/interfaces/semtools/legacy/tests/__init__.py nipype/interfaces/semtools/legacy/tests/test_auto_scalartransform.py nipype/interfaces/semtools/registration/__init__.py nipype/interfaces/semtools/registration/brainsfit.py nipype/interfaces/semtools/registration/brainsresample.py nipype/interfaces/semtools/registration/brainsresize.py nipype/interfaces/semtools/registration/specialized.py nipype/interfaces/semtools/registration/tests/__init__.py nipype/interfaces/semtools/registration/tests/test_auto_BRAINSDemonWarp.py nipype/interfaces/semtools/registration/tests/test_auto_BRAINSFit.py nipype/interfaces/semtools/registration/tests/test_auto_BRAINSResample.py nipype/interfaces/semtools/registration/tests/test_auto_BRAINSResize.py nipype/interfaces/semtools/registration/tests/test_auto_BRAINSTransformFromFiducials.py nipype/interfaces/semtools/registration/tests/test_auto_VBRAINSDemonWarp.py nipype/interfaces/semtools/segmentation/__init__.py nipype/interfaces/semtools/segmentation/specialized.py nipype/interfaces/semtools/segmentation/tests/__init__.py nipype/interfaces/semtools/segmentation/tests/test_auto_BRAINSABC.py nipype/interfaces/semtools/segmentation/tests/test_auto_BRAINSConstellationDetector.py nipype/interfaces/semtools/segmentation/tests/test_auto_BRAINSCreateLabelMapFromProbabilityMaps.py nipype/interfaces/semtools/segmentation/tests/test_auto_BRAINSCut.py nipype/interfaces/semtools/segmentation/tests/test_auto_BRAINSMultiSTAPLE.py nipype/interfaces/semtools/segmentation/tests/test_auto_BRAINSROIAuto.py nipype/interfaces/semtools/segmentation/tests/test_auto_BinaryMaskEditorBasedOnLandmarks.py nipype/interfaces/semtools/segmentation/tests/test_auto_ESLR.py nipype/interfaces/semtools/testing/__init__.py nipype/interfaces/semtools/testing/featuredetection.py nipype/interfaces/semtools/testing/generateaveragelmkfile.py nipype/interfaces/semtools/testing/landmarkscompare.py nipype/interfaces/semtools/tests/__init__.py nipype/interfaces/semtools/tests/test_auto_DWICompare.py nipype/interfaces/semtools/tests/test_auto_DWISimpleCompare.py nipype/interfaces/semtools/tests/test_auto_GenerateCsfClippedFromClassifiedImage.py nipype/interfaces/semtools/utilities/__init__.py nipype/interfaces/semtools/utilities/brains.py nipype/interfaces/semtools/utilities/tests/__init__.py nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSAlignMSP.py nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSClipInferior.py nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSConstellationModeler.py nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSEyeDetector.py nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSInitializedControlPoints.py nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSLandmarkInitializer.py nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSLinearModelerEPCA.py nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSLmkTransform.py nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSMush.py nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSSnapShotWriter.py nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSTransformConvert.py nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSTrimForegroundInDirection.py nipype/interfaces/semtools/utilities/tests/test_auto_CleanUpOverlapLabels.py nipype/interfaces/semtools/utilities/tests/test_auto_FindCenterOfBrain.py nipype/interfaces/semtools/utilities/tests/test_auto_GenerateLabelMapFromProbabilityMap.py nipype/interfaces/semtools/utilities/tests/test_auto_ImageRegionPlotter.py nipype/interfaces/semtools/utilities/tests/test_auto_JointHistogram.py nipype/interfaces/semtools/utilities/tests/test_auto_ShuffleVectorsModule.py nipype/interfaces/semtools/utilities/tests/test_auto_fcsv_to_hdf5.py nipype/interfaces/semtools/utilities/tests/test_auto_insertMidACPCpoint.py nipype/interfaces/semtools/utilities/tests/test_auto_landmarksConstellationAligner.py nipype/interfaces/semtools/utilities/tests/test_auto_landmarksConstellationWeights.py nipype/interfaces/slicer/__init__.py nipype/interfaces/slicer/base.py nipype/interfaces/slicer/converters.py nipype/interfaces/slicer/diffusion/__init__.py nipype/interfaces/slicer/diffusion/diffusion.py nipype/interfaces/slicer/diffusion/tests/__init__.py nipype/interfaces/slicer/diffusion/tests/test_auto_DTIexport.py nipype/interfaces/slicer/diffusion/tests/test_auto_DTIimport.py nipype/interfaces/slicer/diffusion/tests/test_auto_DWIJointRicianLMMSEFilter.py nipype/interfaces/slicer/diffusion/tests/test_auto_DWIRicianLMMSEFilter.py nipype/interfaces/slicer/diffusion/tests/test_auto_DWIToDTIEstimation.py nipype/interfaces/slicer/diffusion/tests/test_auto_DiffusionTensorScalarMeasurements.py nipype/interfaces/slicer/diffusion/tests/test_auto_DiffusionWeightedVolumeMasking.py nipype/interfaces/slicer/diffusion/tests/test_auto_ResampleDTIVolume.py nipype/interfaces/slicer/diffusion/tests/test_auto_TractographyLabelMapSeeding.py nipype/interfaces/slicer/filtering/__init__.py nipype/interfaces/slicer/filtering/arithmetic.py nipype/interfaces/slicer/filtering/checkerboardfilter.py nipype/interfaces/slicer/filtering/denoising.py nipype/interfaces/slicer/filtering/extractskeleton.py nipype/interfaces/slicer/filtering/histogrammatching.py nipype/interfaces/slicer/filtering/imagelabelcombine.py nipype/interfaces/slicer/filtering/morphology.py nipype/interfaces/slicer/filtering/n4itkbiasfieldcorrection.py nipype/interfaces/slicer/filtering/resamplescalarvectordwivolume.py nipype/interfaces/slicer/filtering/tests/__init__.py nipype/interfaces/slicer/filtering/tests/test_auto_AddScalarVolumes.py nipype/interfaces/slicer/filtering/tests/test_auto_CastScalarVolume.py nipype/interfaces/slicer/filtering/tests/test_auto_CheckerBoardFilter.py nipype/interfaces/slicer/filtering/tests/test_auto_CurvatureAnisotropicDiffusion.py nipype/interfaces/slicer/filtering/tests/test_auto_ExtractSkeleton.py nipype/interfaces/slicer/filtering/tests/test_auto_GaussianBlurImageFilter.py nipype/interfaces/slicer/filtering/tests/test_auto_GradientAnisotropicDiffusion.py nipype/interfaces/slicer/filtering/tests/test_auto_GrayscaleFillHoleImageFilter.py nipype/interfaces/slicer/filtering/tests/test_auto_GrayscaleGrindPeakImageFilter.py nipype/interfaces/slicer/filtering/tests/test_auto_HistogramMatching.py nipype/interfaces/slicer/filtering/tests/test_auto_ImageLabelCombine.py nipype/interfaces/slicer/filtering/tests/test_auto_MaskScalarVolume.py nipype/interfaces/slicer/filtering/tests/test_auto_MedianImageFilter.py nipype/interfaces/slicer/filtering/tests/test_auto_MultiplyScalarVolumes.py nipype/interfaces/slicer/filtering/tests/test_auto_N4ITKBiasFieldCorrection.py nipype/interfaces/slicer/filtering/tests/test_auto_ResampleScalarVectorDWIVolume.py nipype/interfaces/slicer/filtering/tests/test_auto_SubtractScalarVolumes.py nipype/interfaces/slicer/filtering/tests/test_auto_ThresholdScalarVolume.py nipype/interfaces/slicer/filtering/tests/test_auto_VotingBinaryHoleFillingImageFilter.py nipype/interfaces/slicer/filtering/thresholdscalarvolume.py nipype/interfaces/slicer/filtering/votingbinaryholefillingimagefilter.py nipype/interfaces/slicer/generate_classes.py nipype/interfaces/slicer/legacy/__init__.py nipype/interfaces/slicer/legacy/converters.py nipype/interfaces/slicer/legacy/diffusion/__init__.py nipype/interfaces/slicer/legacy/diffusion/denoising.py nipype/interfaces/slicer/legacy/diffusion/tests/__init__.py nipype/interfaces/slicer/legacy/diffusion/tests/test_auto_DWIUnbiasedNonLocalMeansFilter.py nipype/interfaces/slicer/legacy/filtering.py nipype/interfaces/slicer/legacy/registration.py nipype/interfaces/slicer/legacy/segmentation.py nipype/interfaces/slicer/legacy/tests/__init__.py nipype/interfaces/slicer/legacy/tests/test_auto_AffineRegistration.py nipype/interfaces/slicer/legacy/tests/test_auto_BSplineDeformableRegistration.py nipype/interfaces/slicer/legacy/tests/test_auto_BSplineToDeformationField.py nipype/interfaces/slicer/legacy/tests/test_auto_ExpertAutomatedRegistration.py nipype/interfaces/slicer/legacy/tests/test_auto_LinearRegistration.py nipype/interfaces/slicer/legacy/tests/test_auto_MultiResolutionAffineRegistration.py nipype/interfaces/slicer/legacy/tests/test_auto_OtsuThresholdImageFilter.py nipype/interfaces/slicer/legacy/tests/test_auto_OtsuThresholdSegmentation.py nipype/interfaces/slicer/legacy/tests/test_auto_ResampleScalarVolume.py nipype/interfaces/slicer/legacy/tests/test_auto_RigidRegistration.py nipype/interfaces/slicer/quantification/__init__.py nipype/interfaces/slicer/quantification/changequantification.py nipype/interfaces/slicer/quantification/petstandarduptakevaluecomputation.py nipype/interfaces/slicer/quantification/tests/__init__.py nipype/interfaces/slicer/quantification/tests/test_auto_IntensityDifferenceMetric.py nipype/interfaces/slicer/quantification/tests/test_auto_PETStandardUptakeValueComputation.py nipype/interfaces/slicer/registration/__init__.py nipype/interfaces/slicer/registration/brainsfit.py nipype/interfaces/slicer/registration/brainsresample.py nipype/interfaces/slicer/registration/specialized.py nipype/interfaces/slicer/registration/tests/__init__.py nipype/interfaces/slicer/registration/tests/test_auto_ACPCTransform.py nipype/interfaces/slicer/registration/tests/test_auto_BRAINSDemonWarp.py nipype/interfaces/slicer/registration/tests/test_auto_BRAINSFit.py nipype/interfaces/slicer/registration/tests/test_auto_BRAINSResample.py nipype/interfaces/slicer/registration/tests/test_auto_FiducialRegistration.py nipype/interfaces/slicer/registration/tests/test_auto_VBRAINSDemonWarp.py nipype/interfaces/slicer/segmentation/__init__.py nipype/interfaces/slicer/segmentation/simpleregiongrowingsegmentation.py nipype/interfaces/slicer/segmentation/specialized.py nipype/interfaces/slicer/segmentation/tests/__init__.py nipype/interfaces/slicer/segmentation/tests/test_auto_BRAINSROIAuto.py nipype/interfaces/slicer/segmentation/tests/test_auto_EMSegmentCommandLine.py nipype/interfaces/slicer/segmentation/tests/test_auto_RobustStatisticsSegmenter.py nipype/interfaces/slicer/segmentation/tests/test_auto_SimpleRegionGrowingSegmentation.py nipype/interfaces/slicer/surface.py nipype/interfaces/slicer/tests/__init__.py nipype/interfaces/slicer/tests/test_auto_DicomToNrrdConverter.py nipype/interfaces/slicer/tests/test_auto_EMSegmentTransformToNewFormat.py nipype/interfaces/slicer/tests/test_auto_GrayscaleModelMaker.py nipype/interfaces/slicer/tests/test_auto_LabelMapSmoothing.py nipype/interfaces/slicer/tests/test_auto_MergeModels.py nipype/interfaces/slicer/tests/test_auto_ModelMaker.py nipype/interfaces/slicer/tests/test_auto_ModelToLabelMap.py nipype/interfaces/slicer/tests/test_auto_OrientScalarVolume.py nipype/interfaces/slicer/tests/test_auto_ProbeVolumeWithModel.py nipype/interfaces/slicer/tests/test_auto_SlicerCommandLine.py nipype/interfaces/slicer/utilities.py nipype/interfaces/spm/__init__.py nipype/interfaces/spm/base.py nipype/interfaces/spm/model.py nipype/interfaces/spm/preprocess.py nipype/interfaces/spm/tests/__init__.py nipype/interfaces/spm/tests/test_auto_Analyze2nii.py nipype/interfaces/spm/tests/test_auto_ApplyDeformations.py nipype/interfaces/spm/tests/test_auto_ApplyInverseDeformation.py nipype/interfaces/spm/tests/test_auto_ApplyTransform.py nipype/interfaces/spm/tests/test_auto_CalcCoregAffine.py nipype/interfaces/spm/tests/test_auto_Coregister.py nipype/interfaces/spm/tests/test_auto_CreateWarped.py nipype/interfaces/spm/tests/test_auto_DARTEL.py nipype/interfaces/spm/tests/test_auto_DARTELNorm2MNI.py nipype/interfaces/spm/tests/test_auto_DicomImport.py nipype/interfaces/spm/tests/test_auto_EstimateContrast.py nipype/interfaces/spm/tests/test_auto_EstimateModel.py nipype/interfaces/spm/tests/test_auto_FactorialDesign.py nipype/interfaces/spm/tests/test_auto_FieldMap.py nipype/interfaces/spm/tests/test_auto_Level1Design.py nipype/interfaces/spm/tests/test_auto_MultiChannelNewSegment.py nipype/interfaces/spm/tests/test_auto_MultipleRegressionDesign.py nipype/interfaces/spm/tests/test_auto_NewSegment.py nipype/interfaces/spm/tests/test_auto_Normalize.py nipype/interfaces/spm/tests/test_auto_Normalize12.py nipype/interfaces/spm/tests/test_auto_OneSampleTTestDesign.py nipype/interfaces/spm/tests/test_auto_PairedTTestDesign.py nipype/interfaces/spm/tests/test_auto_Realign.py nipype/interfaces/spm/tests/test_auto_RealignUnwarp.py nipype/interfaces/spm/tests/test_auto_Reslice.py nipype/interfaces/spm/tests/test_auto_ResliceToReference.py nipype/interfaces/spm/tests/test_auto_SPMCommand.py nipype/interfaces/spm/tests/test_auto_Segment.py nipype/interfaces/spm/tests/test_auto_SliceTiming.py nipype/interfaces/spm/tests/test_auto_Smooth.py nipype/interfaces/spm/tests/test_auto_Threshold.py nipype/interfaces/spm/tests/test_auto_ThresholdStatistics.py nipype/interfaces/spm/tests/test_auto_TwoSampleTTestDesign.py nipype/interfaces/spm/tests/test_auto_VBMSegment.py nipype/interfaces/spm/tests/test_base.py nipype/interfaces/spm/tests/test_model.py nipype/interfaces/spm/tests/test_preprocess.py nipype/interfaces/spm/tests/test_utils.py nipype/interfaces/spm/utils.py nipype/interfaces/tests/__init__.py nipype/interfaces/tests/test_auto_BIDSDataGrabber.py nipype/interfaces/tests/test_auto_Bru2.py nipype/interfaces/tests/test_auto_C3d.py nipype/interfaces/tests/test_auto_C3dAffineTool.py nipype/interfaces/tests/test_auto_CopyMeta.py nipype/interfaces/tests/test_auto_DataFinder.py nipype/interfaces/tests/test_auto_DataGrabber.py nipype/interfaces/tests/test_auto_DataSink.py nipype/interfaces/tests/test_auto_Dcm2nii.py nipype/interfaces/tests/test_auto_Dcm2niix.py nipype/interfaces/tests/test_auto_DcmStack.py nipype/interfaces/tests/test_auto_ExportFile.py nipype/interfaces/tests/test_auto_FreeSurferSource.py nipype/interfaces/tests/test_auto_GroupAndStack.py nipype/interfaces/tests/test_auto_IOBase.py nipype/interfaces/tests/test_auto_JSONFileGrabber.py nipype/interfaces/tests/test_auto_JSONFileSink.py nipype/interfaces/tests/test_auto_LookupMeta.py nipype/interfaces/tests/test_auto_MatlabCommand.py nipype/interfaces/tests/test_auto_MergeNifti.py nipype/interfaces/tests/test_auto_MeshFix.py nipype/interfaces/tests/test_auto_MySQLSink.py nipype/interfaces/tests/test_auto_NiftiGeneratorBase.py nipype/interfaces/tests/test_auto_NilearnBaseInterface.py nipype/interfaces/tests/test_auto_PETPVC.py nipype/interfaces/tests/test_auto_Quickshear.py nipype/interfaces/tests/test_auto_Reorient.py nipype/interfaces/tests/test_auto_Rescale.py nipype/interfaces/tests/test_auto_S3DataGrabber.py nipype/interfaces/tests/test_auto_SQLiteSink.py nipype/interfaces/tests/test_auto_SSHDataGrabber.py nipype/interfaces/tests/test_auto_SelectFiles.py nipype/interfaces/tests/test_auto_SignalExtraction.py nipype/interfaces/tests/test_auto_SlicerCommandLine.py nipype/interfaces/tests/test_auto_SplitNifti.py nipype/interfaces/tests/test_auto_XNATSink.py nipype/interfaces/tests/test_auto_XNATSource.py nipype/interfaces/tests/test_extra_dcm2nii.py nipype/interfaces/tests/test_image.py nipype/interfaces/tests/test_io.py nipype/interfaces/tests/test_matlab.py nipype/interfaces/tests/test_nilearn.py nipype/interfaces/utility/__init__.py nipype/interfaces/utility/base.py nipype/interfaces/utility/csv.py nipype/interfaces/utility/tests/__init__.py nipype/interfaces/utility/tests/test_auto_AssertEqual.py nipype/interfaces/utility/tests/test_auto_CSVReader.py nipype/interfaces/utility/tests/test_auto_Function.py nipype/interfaces/utility/tests/test_auto_IdentityInterface.py nipype/interfaces/utility/tests/test_auto_Merge.py nipype/interfaces/utility/tests/test_auto_Rename.py nipype/interfaces/utility/tests/test_auto_Select.py nipype/interfaces/utility/tests/test_auto_Split.py nipype/interfaces/utility/tests/test_base.py nipype/interfaces/utility/tests/test_csv.py nipype/interfaces/utility/tests/test_wrappers.py nipype/interfaces/utility/wrappers.py nipype/interfaces/vista/__init__.py nipype/interfaces/vista/tests/__init__.py nipype/interfaces/vista/tests/test_auto_Vnifti2Image.py nipype/interfaces/vista/tests/test_auto_VtoMat.py nipype/interfaces/vista/vista.py nipype/interfaces/vtkbase.py nipype/interfaces/workbench/__init__.py nipype/interfaces/workbench/base.py nipype/interfaces/workbench/cifti.py nipype/interfaces/workbench/metric.py nipype/interfaces/workbench/tests/__init__.py nipype/interfaces/workbench/tests/test_auto_CiftiSmooth.py nipype/interfaces/workbench/tests/test_auto_MetricResample.py nipype/interfaces/workbench/tests/test_auto_WBCommand.py nipype/pipeline/__init__.py nipype/pipeline/engine/__init__.py nipype/pipeline/engine/base.py nipype/pipeline/engine/nodes.py nipype/pipeline/engine/report_template.html nipype/pipeline/engine/report_template2.html nipype/pipeline/engine/tests/__init__.py nipype/pipeline/engine/tests/test_base.py nipype/pipeline/engine/tests/test_engine.py nipype/pipeline/engine/tests/test_join.py nipype/pipeline/engine/tests/test_nodes.py nipype/pipeline/engine/tests/test_utils.py nipype/pipeline/engine/tests/test_workflows.py nipype/pipeline/engine/utils.py nipype/pipeline/engine/workflows.py nipype/pipeline/plugins/__init__.py nipype/pipeline/plugins/base.py nipype/pipeline/plugins/condor.py nipype/pipeline/plugins/dagman.py nipype/pipeline/plugins/debug.py nipype/pipeline/plugins/ipython.py nipype/pipeline/plugins/legacymultiproc.py nipype/pipeline/plugins/linear.py nipype/pipeline/plugins/lsf.py nipype/pipeline/plugins/multiproc.py nipype/pipeline/plugins/oar.py nipype/pipeline/plugins/pbs.py nipype/pipeline/plugins/pbsgraph.py nipype/pipeline/plugins/semaphore_singleton.py nipype/pipeline/plugins/sge.py nipype/pipeline/plugins/sgegraph.py nipype/pipeline/plugins/slurm.py nipype/pipeline/plugins/slurmgraph.py nipype/pipeline/plugins/somaflow.py nipype/pipeline/plugins/tests/__init__.py nipype/pipeline/plugins/tests/test_base.py nipype/pipeline/plugins/tests/test_callback.py nipype/pipeline/plugins/tests/test_debug.py nipype/pipeline/plugins/tests/test_legacymultiproc_nondaemon.py nipype/pipeline/plugins/tests/test_linear.py nipype/pipeline/plugins/tests/test_multiproc.py nipype/pipeline/plugins/tests/test_oar.py nipype/pipeline/plugins/tests/test_pbs.py nipype/pipeline/plugins/tests/test_sgelike.py nipype/pipeline/plugins/tests/test_somaflow.py nipype/pipeline/plugins/tests/test_tools.py nipype/pipeline/plugins/tools.py nipype/pkg_info.py nipype/pytest.ini nipype/refs.py nipype/scripts/__init__.py nipype/scripts/cli.py nipype/scripts/crash_files.py nipype/scripts/instance.py nipype/scripts/utils.py nipype/sphinxext/__init__.py nipype/sphinxext/apidoc/__init__.py nipype/sphinxext/apidoc/docstring.py nipype/sphinxext/documenter.py nipype/sphinxext/gh.py nipype/sphinxext/plot_workflow.py nipype/testing/__init__.py nipype/testing/data/4d_dwi.nii nipype/testing/data/A.scheme nipype/testing/data/A_qmat.Bdouble nipype/testing/data/A_recon_params.Bdouble nipype/testing/data/AffineTransform.mat nipype/testing/data/BrainSegmentationPrior01.nii.gz nipype/testing/data/BrainSegmentationPrior02.nii.gz nipype/testing/data/BrainSegmentationPrior03.nii.gz nipype/testing/data/BrainSegmentationPrior04.nii.gz nipype/testing/data/DisplacementFieldTransform.nii.gz nipype/testing/data/FLASH1.mgz nipype/testing/data/FLASH2.mgz nipype/testing/data/FLASH3.mgz nipype/testing/data/Fred+orig nipype/testing/data/FreeSurferColorLUT.txt nipype/testing/data/FreeSurferColorLUT_adapted_aparc+aseg_out.pck nipype/testing/data/MASK_average_thal_right.nii nipype/testing/data/NWARP nipype/testing/data/PD.mgz nipype/testing/data/ProbabilityMaskOfStudyTemplate.nii.gz nipype/testing/data/Q25_warp+tlrc.HEAD nipype/testing/data/QSH_peaks.Bdouble nipype/testing/data/README nipype/testing/data/ROI_scale500.nii.gz nipype/testing/data/SPM.mat nipype/testing/data/SubjectA.Bfloat nipype/testing/data/T1.mgz nipype/testing/data/T1.nii nipype/testing/data/T1.nii.gz nipype/testing/data/T1_brain.nii nipype/testing/data/T1map.nii.gz nipype/testing/data/T2.nii nipype/testing/data/TI4D.nii.gz nipype/testing/data/TPM.nii nipype/testing/data/Template_1_IXI550_MNI152.nii nipype/testing/data/Template_6.nii nipype/testing/data/TransformParameters.0.txt nipype/testing/data/afni_output.3D nipype/testing/data/allFA.nii nipype/testing/data/all_FA.nii.gz nipype/testing/data/anat_coreg.mif nipype/testing/data/anatomical.nii nipype/testing/data/ants_Affine.txt nipype/testing/data/ants_Warp.nii.gz nipype/testing/data/ants_deformed.nii.gz nipype/testing/data/aparc+aseg.nii nipype/testing/data/aseg.mgz nipype/testing/data/asl.nii.gz nipype/testing/data/atlas.nii.gz nipype/testing/data/b0.nii nipype/testing/data/b0.nii.gz nipype/testing/data/b0_b0rev.nii nipype/testing/data/ballstickfit_data.Bfloat nipype/testing/data/bedpostxout/do_not_delete.txt nipype/testing/data/brain_mask.nii nipype/testing/data/brain_study_template.nii.gz nipype/testing/data/brain_track.Bdouble nipype/testing/data/brukerdir/fid nipype/testing/data/brukerdir/pdata/1/2dseq nipype/testing/data/bvals nipype/testing/data/bvals.scheme nipype/testing/data/bvecs nipype/testing/data/bvecs.scheme nipype/testing/data/c1s1.nii nipype/testing/data/c1s3.nii nipype/testing/data/clustering.mat nipype/testing/data/cmatrix.mat nipype/testing/data/complex.nii nipype/testing/data/config.ini nipype/testing/data/cont1.nii nipype/testing/data/cont1a.nii nipype/testing/data/cont2.nii nipype/testing/data/cont2a.nii nipype/testing/data/converted.trk nipype/testing/data/cope.nii.gz nipype/testing/data/cope1.nii.gz nipype/testing/data/cope1run1.nii.gz nipype/testing/data/cope1run2.nii.gz nipype/testing/data/cope2run1.nii.gz nipype/testing/data/cope2run2.nii.gz nipype/testing/data/cortex.label nipype/testing/data/cov_split.mat nipype/testing/data/csd.mif nipype/testing/data/data.Bfloat nipype/testing/data/db.xml nipype/testing/data/degree.csv nipype/testing/data/degree.mat nipype/testing/data/design.con nipype/testing/data/design.mat nipype/testing/data/dicomdir/123456-1-1.dcm nipype/testing/data/diffusion.nii nipype/testing/data/diffusion_weighted.nii nipype/testing/data/dilated_wm_mask.nii nipype/testing/data/dirs.txt nipype/testing/data/dofrun1 nipype/testing/data/dofrun2 nipype/testing/data/ds003_sub-01_mc.DVARS nipype/testing/data/ds003_sub-01_mc.nii.gz nipype/testing/data/ds003_sub-01_mc_brainmask.nii.gz nipype/testing/data/ds005/filler.txt nipype/testing/data/dteig.Bdouble nipype/testing/data/dti.mif nipype/testing/data/dwi.mif nipype/testing/data/dwi.nii.gz nipype/testing/data/dwi2anat_InverseWarp.nii.gz nipype/testing/data/dwi2anat_Warp.nii.gz nipype/testing/data/dwi2anat_coreg_Affine.txt nipype/testing/data/dwi_CSD_tracked.tck nipype/testing/data/dwi_FA.mif nipype/testing/data/dwi_WMProb.mif nipype/testing/data/dwi_evals.nii nipype/testing/data/dwi_tensor.mif nipype/testing/data/elastix.txt nipype/testing/data/encoding.txt nipype/testing/data/epi.nii nipype/testing/data/epi_acqp.txt nipype/testing/data/epi_index.txt nipype/testing/data/epi_mask.nii nipype/testing/data/epi_param.txt nipype/testing/data/epi_phasediff.nii nipype/testing/data/epi_rev.nii nipype/testing/data/epi_slspec.txt nipype/testing/data/events.tsv nipype/testing/data/f1.1D nipype/testing/data/f2.1D nipype/testing/data/fa.nii.gz nipype/testing/data/fdir00.nii nipype/testing/data/fdir01.nii nipype/testing/data/ffra00.nii nipype/testing/data/ffra01.nii nipype/testing/data/fieldmap_mag.nii nipype/testing/data/fieldmap_mag_brain.nii nipype/testing/data/fieldmap_phase_fslprepared.nii nipype/testing/data/first_merged.nii.gz nipype/testing/data/fitted_data1.Bfloat nipype/testing/data/fitted_data2.Bfloat nipype/testing/data/fixed1.nii nipype/testing/data/fixed2.nii nipype/testing/data/flash_05.mgz nipype/testing/data/flash_30.mgz nipype/testing/data/flirt.mat nipype/testing/data/fmri_timeseries.csv nipype/testing/data/fmri_timeseries_nolabels.csv nipype/testing/data/fods.mif nipype/testing/data/fsLUT_aparc+aseg.pck nipype/testing/data/fs_LR-deformed_to-fsaverage.L.sphere.32k_fs_LR.surf.gii nipype/testing/data/fs_LR.L.midthickness_va_avg.32k_fs_LR.shape.gii nipype/testing/data/fsaverage5.L.midthickness_va_avg.10k_fsavg_L.shape.gii nipype/testing/data/fsaverage5_std_sphere.L.10k_fsavg_L.surf.gii nipype/testing/data/fsl_mcflirt_movpar.txt nipype/testing/data/fsl_motion_outliers_fd.txt nipype/testing/data/func2anat_InverseWarp.nii.gz nipype/testing/data/func2anat_coreg_Affine.txt nipype/testing/data/func2anat_coreg_InverseWarp.nii.gz nipype/testing/data/func_epi_1_1.nii nipype/testing/data/func_to_struct.mat nipype/testing/data/functional.HEAD nipype/testing/data/functional.nii nipype/testing/data/functional.par nipype/testing/data/functional.rms nipype/testing/data/functional2.nii nipype/testing/data/functional3.nii nipype/testing/data/functional_1.dcm nipype/testing/data/functional_2.dcm nipype/testing/data/im1.nii nipype/testing/data/im2.nii nipype/testing/data/im3.nii nipype/testing/data/im_affine.aff nipype/testing/data/im_warp.df.nii nipype/testing/data/image.nii nipype/testing/data/image.v nipype/testing/data/indices-labels.txt nipype/testing/data/indices.txt nipype/testing/data/input1.xfm nipype/testing/data/jsongrabber.txt nipype/testing/data/label.mgz nipype/testing/data/lh-pial.stl nipype/testing/data/lh.cope1.mgz nipype/testing/data/lh.cope1.nii.gz nipype/testing/data/lh.hippocampus.stl nipype/testing/data/lh.pial nipype/testing/data/lh.pial_converted.gii nipype/testing/data/lh.white nipype/testing/data/lta1.lta nipype/testing/data/lta2.lta nipype/testing/data/lut_file nipype/testing/data/magnitude.nii nipype/testing/data/maps.nii nipype/testing/data/mask.1D nipype/testing/data/mask.mif nipype/testing/data/mask.nii nipype/testing/data/mask.nii.gz nipype/testing/data/mean_func.nii.gz nipype/testing/data/merged_f1samples.nii.gz nipype/testing/data/merged_fsamples.nii nipype/testing/data/merged_ph1samples.nii.gz nipype/testing/data/merged_phsamples.nii nipype/testing/data/merged_th1samples.nii.gz nipype/testing/data/merged_thsamples.nii nipype/testing/data/minc_initial.xfm nipype/testing/data/minc_nlp.conf nipype/testing/data/minc_test_2D_00.mnc nipype/testing/data/minc_test_2D_01.mnc nipype/testing/data/minc_test_2D_02.mnc nipype/testing/data/minc_test_2D_03.mnc nipype/testing/data/minc_test_2D_04.mnc nipype/testing/data/minc_test_2D_05.mnc nipype/testing/data/minc_test_2D_06.mnc nipype/testing/data/minc_test_2D_07.mnc nipype/testing/data/minc_test_2D_08.mnc nipype/testing/data/minc_test_2D_09.mnc nipype/testing/data/minc_test_3D_00.mnc nipype/testing/data/minc_test_3D_01.mnc nipype/testing/data/minc_test_3D_02.mnc nipype/testing/data/minc_test_3D_03.mnc nipype/testing/data/minc_test_3D_04.mnc nipype/testing/data/minc_test_3D_05.mnc nipype/testing/data/minc_test_3D_06.mnc nipype/testing/data/minc_test_3D_07.mnc nipype/testing/data/minc_test_3D_08.mnc nipype/testing/data/minc_test_3D_09.mnc nipype/testing/data/mni.nii nipype/testing/data/mni2t1.nii nipype/testing/data/model.pklz nipype/testing/data/moving.csv nipype/testing/data/moving1.nii nipype/testing/data/moving2.nii nipype/testing/data/mrtrix3_labelconfig.txt nipype/testing/data/my_database.db nipype/testing/data/network0.aparc+aseg.nii nipype/testing/data/network0.gpickle nipype/testing/data/nipype2boutiques_example.json nipype/testing/data/nodif_brain_mask.nii.gz nipype/testing/data/norm.mgz nipype/testing/data/output.csv nipype/testing/data/output_Composite.h5 nipype/testing/data/pdfs.Bfloat nipype/testing/data/peak_directions.mif nipype/testing/data/pet.nii.gz nipype/testing/data/pet_resliced.nii nipype/testing/data/phase.nii nipype/testing/data/rc1s1.nii nipype/testing/data/rc1s2.nii nipype/testing/data/rc2s1.nii nipype/testing/data/rc2s2.nii nipype/testing/data/realign_json.json nipype/testing/data/ref_class0.nii nipype/testing/data/ref_class1.nii nipype/testing/data/register.dat nipype/testing/data/register.mat nipype/testing/data/resp.1D nipype/testing/data/response.txt nipype/testing/data/resting.nii nipype/testing/data/resting2anat_Warp.nii.gz nipype/testing/data/resting2anat_coreg_Affine.txt nipype/testing/data/rgb.nii.gz nipype/testing/data/rh-pial.stl nipype/testing/data/rh.pial nipype/testing/data/rh.pial_converted.gii nipype/testing/data/roi01.nii nipype/testing/data/roi01_idx.npz nipype/testing/data/roi02.nii nipype/testing/data/roi02_idx.npz nipype/testing/data/roi03.nii nipype/testing/data/roi03_idx.npz nipype/testing/data/roi04.nii nipype/testing/data/roi04_idx.npz nipype/testing/data/roi05.nii nipype/testing/data/roi05_idx.npz nipype/testing/data/run1+orig nipype/testing/data/run1+orig_model nipype/testing/data/run1_categories.1D nipype/testing/data/run2+orig nipype/testing/data/run2_categories.1D nipype/testing/data/seed.1D nipype/testing/data/seed_mask.nii nipype/testing/data/seed_source.nii.gz nipype/testing/data/seeds_to_M1.nii nipype/testing/data/seeds_to_M2.nii nipype/testing/data/segmentation0.nii.gz nipype/testing/data/segmentation1.nii.gz nipype/testing/data/session_info.npz nipype/testing/data/skeleton_mask.nii.gz nipype/testing/data/smri_ants_registration_settings.json nipype/testing/data/spmT_0001.img nipype/testing/data/spminfo nipype/testing/data/streamlines.trk nipype/testing/data/struct2mni.nii nipype/testing/data/struct_to_func.mat nipype/testing/data/struct_to_template.mat nipype/testing/data/structural.nii nipype/testing/data/study_template.nii.gz nipype/testing/data/sub-01.L.midthickness.32k_fs_LR.surf.gii nipype/testing/data/sub-01.R.midthickness.32k_fs_LR.surf.gii nipype/testing/data/sub-01_dir-LR_epi.nii.gz nipype/testing/data/sub-01_dir-RL_epi.nii.gz nipype/testing/data/sub-01_task-rest.dtseries.nii nipype/testing/data/sub-01_task-rest_bold_space-fsaverage5.L.func.gii nipype/testing/data/subj1.cff nipype/testing/data/subj1.pck nipype/testing/data/subj2.cff nipype/testing/data/subj2.pck nipype/testing/data/subjectDesign.con nipype/testing/data/subjectDesign.mat nipype/testing/data/surf.txt nipype/testing/data/surf01.vtk nipype/testing/data/surf1.vtk nipype/testing/data/surf2.vtk nipype/testing/data/targets_MASK1.nii nipype/testing/data/targets_MASK2.nii nipype/testing/data/tbss_dir/do_not_delete.txt nipype/testing/data/tdi.mif nipype/testing/data/tensor_fitted_data.Bdouble nipype/testing/data/timeDesign.con nipype/testing/data/timeDesign.mat nipype/testing/data/timeseries.txt nipype/testing/data/tissue+air_map.nii nipype/testing/data/tissues.nii.gz nipype/testing/data/topup_encoding.txt nipype/testing/data/topup_fieldcoef.nii.gz nipype/testing/data/topup_movpar.txt nipype/testing/data/tpm_00.nii.gz nipype/testing/data/tpm_01.nii.gz nipype/testing/data/tpm_02.nii.gz nipype/testing/data/tpms_msk.nii.gz nipype/testing/data/track1.trk nipype/testing/data/track2.trk nipype/testing/data/tracks.tck nipype/testing/data/tracks.trk nipype/testing/data/tract_data.Bfloat nipype/testing/data/tracts.Bdouble nipype/testing/data/trans.mat nipype/testing/data/tst_class0.nii nipype/testing/data/tst_class1.nii nipype/testing/data/u_rc1s1_Template.nii nipype/testing/data/u_rc1s2_Template.nii nipype/testing/data/u_rc1s3_Template.nii nipype/testing/data/varcope.nii.gz nipype/testing/data/varcope1run1.nii.gz nipype/testing/data/varcope1run2.nii.gz nipype/testing/data/varcope2run1.nii.gz nipype/testing/data/varcope2run2.nii.gz nipype/testing/data/voxel-order_data.Bfloat nipype/testing/data/voxeldisplacemap.vdm nipype/testing/data/vsm.nii nipype/testing/data/warpfield.nii nipype/testing/data/weights.txt nipype/testing/data/wm.mgz nipype/testing/data/wm_mask.mif nipype/testing/data/wm_undersampled.nii nipype/testing/data/zstat1.nii.gz nipype/testing/decorators.py nipype/testing/fixtures.py nipype/testing/tests/test_utils.py nipype/testing/utils.py nipype/tests/__init__.py nipype/tests/test_nipype.py nipype/utils/README.txt nipype/utils/__init__.py nipype/utils/config.py nipype/utils/docparse.py nipype/utils/draw_gantt_chart.py nipype/utils/filemanip.py nipype/utils/functions.py nipype/utils/imagemanip.py nipype/utils/logger.py nipype/utils/matlabtools.py nipype/utils/misc.py nipype/utils/nipype2boutiques.py nipype/utils/nipype_cmd.py nipype/utils/onetime.py nipype/utils/profiler.py nipype/utils/provenance.py nipype/utils/spm_docs.py nipype/utils/spm_flat_config.m nipype/utils/spm_get_doc.m nipype/utils/subprocess.py nipype/utils/tests/__init__.py nipype/utils/tests/test_cmd.py nipype/utils/tests/test_config.py nipype/utils/tests/test_docparse.py nipype/utils/tests/test_filemanip.py nipype/utils/tests/test_functions.py nipype/utils/tests/test_imagemanip.py nipype/utils/tests/test_misc.py nipype/utils/tests/test_nipype2boutiques.py nipype/utils/tests/test_provenance.py nipype/utils/tests/use_resources nipype/utils/tmpdirs.py nipype/workflows/__init__.py requirements.txt setup.cfg setup.py tools/checkspecs.py tools/ex2rst tools/feedstock.sh tools/gitwash_dumper.py tools/install_spm_mcr.sh tools/retry_cmd.sh tools/run_examples.py tools/toollib.py tools/update_changes.sh tools/update_requirements.py tools/update_zenodo.py <<<<<< network # path=/home/circleci/work/tests/coverage_py36.xml <<<<<< EOF