2bit/eboVir3.2bit 2bit/index.toml 2bit/testMask.2bit 2bit/testN.2bit ABI/310.ab1 ABI/3100.ab1 ABI/3730.ab1 ABI/A6_1-DB3.ab1 ABI/empty.ab1 ABI/fake.ab1 ABI/index.toml BAM/GSE25840_GSM424320_GM06985_gencode_spliced.head.bam BAM/GSE25840_GSM424320_GM06985_gencode_spliced.head.bam.bai BAM/R_12h_D06.uniq.q40.bam BAM/R_12h_D06.uniq.q40.bam.bai BAM/bam1.bam BAM/bam2.bam BAM/ce#1.bam BAM/ce#2.bam BAM/ce#5.bam BAM/ce#5b.bam BAM/ce#unmap.bam BAM/ce#unmap1.bam BAM/ce#unmap2.bam BAM/cigar-64k.bam BAM/cigar-64k.bam.bai BAM/ex1.bam BAM/ex1_header.bam BAM/index.toml BBI/bigWig1.bw BBI/index.toml BBI/insertionsPrimary.bb BCF/empty.bcf BCF/example.bcf BCF/index.toml BED/bedPileUps-foo.bed BED/index.toml BED/itemRgb.bed BED/overlapSelect-NM_001206.bed BED/overlapSelect-NM_015110.bed BED/overlapSelect-NM_015110.split.bed BED/overlapSelect-ceil1.in.bed BED/overlapSelect-ceil1.sel.bed BED/overlapSelect-mrna.bed BED/overlapSelect-refgene.bed BED/overlapSelect-statsSelect.bed BED/overlapSelect-wideIn.bed BED/overlapSelect-wideSelect.bed BED/vgLoadMahoney-clonePcr.bed BED/ws245Genes.WBGene.bed.bgz BED/ws245Genes.WBGene.bed.bgz.tbi BLASTDB/cysprot.phr BLASTDB/cysprot.pin BLASTDB/cysprot.psq BLASTDB/cysprot.xml BLASTDB/f002.nhr BLASTDB/f002.nin BLASTDB/f002.nsq BLASTDB/f002.xml BLASTDB/index.toml FASTA/AAC12660.fasta FASTA/EFTU_BACSU.fasta FASTA/HUMBETGLOA.fasta FASTA/P02456.fasta FASTA/alnfile.fasta FASTA/amino.fasta FASTA/aster.fasta FASTA/badfasta.fasta FASTA/bug2901.fasta FASTA/centaurea.fasta FASTA/cysprot.fasta FASTA/cysprot1.fasta FASTA/cysprot1a.fasta FASTA/cysprot1b.fasta FASTA/dna1.fasta FASTA/dna2.fasta FASTA/dnaE-bsub-prot.fasta FASTA/dnaE-bsub.fasta FASTA/ecolitst.fasta FASTA/elderberry.fasta FASTA/f001.fasta FASTA/f002.fasta FASTA/f003.fasta FASTA/fa01.fasta FASTA/forward_primer.fasta FASTA/forward_reverse_primers.fasta FASTA/genomic-seq.fasta FASTA/hs_owlmonkey.fasta FASTA/index.toml FASTA/lavender.fasta FASTA/loveliesbleeding.fasta FASTA/lupine.fasta FASTA/multi_1.fasta FASTA/multi_2.fasta FASTA/phlox.fasta FASTA/pictogram.fasta FASTA/primedseq.fasta FASTA/rose.fasta FASTA/rosemary.fasta FASTA/spaced_fasta.fasta FASTA/sweetpea.fasta FASTA/test.fasta FASTA/testaln.fasta FASTA/testaln2.fasta FASTA/wisteria.fasta FASTQ/error_diff_ids.fastq FASTQ/error_double_qual.fastq FASTQ/error_double_seq.fastq FASTQ/error_long_qual.fastq FASTQ/error_no_qual.fastq FASTQ/error_qual_del.fastq FASTQ/error_qual_escape.fastq FASTQ/error_qual_null.fastq FASTQ/error_qual_space.fastq FASTQ/error_qual_tab.fastq FASTQ/error_qual_unit_sep.fastq FASTQ/error_qual_vtab.fastq FASTQ/error_short_qual.fastq FASTQ/error_spaces.fastq FASTQ/error_tabs.fastq FASTQ/error_trunc_at_plus.fastq FASTQ/error_trunc_at_qual.fastq FASTQ/error_trunc_at_seq.fastq FASTQ/error_trunc_in_plus.fastq FASTQ/error_trunc_in_qual.fastq FASTQ/error_trunc_in_seq.fastq FASTQ/error_trunc_in_title.fastq FASTQ/example.fastq FASTQ/example_dos.fastq FASTQ/illumina_faked.fastq FASTQ/illumina_full_range_as_illumina.fastq FASTQ/illumina_full_range_as_sanger.fastq FASTQ/illumina_full_range_as_solexa.fastq FASTQ/illumina_full_range_original_illumina.fastq FASTQ/index.toml FASTQ/longreads_as_illumina.fastq FASTQ/longreads_as_sanger.fastq FASTQ/longreads_as_solexa.fastq FASTQ/longreads_original_sanger.fastq FASTQ/misc_dna_as_illumina.fastq FASTQ/misc_dna_as_sanger.fastq FASTQ/misc_dna_as_solexa.fastq FASTQ/misc_dna_original_sanger.fastq FASTQ/misc_rna_as_illumina.fastq FASTQ/misc_rna_as_sanger.fastq FASTQ/misc_rna_as_solexa.fastq FASTQ/misc_rna_original_sanger.fastq FASTQ/sanger_93.fastq FASTQ/sanger_faked.fastq FASTQ/sanger_full_range_as_illumina.fastq FASTQ/sanger_full_range_as_sanger.fastq FASTQ/sanger_full_range_as_solexa.fastq FASTQ/sanger_full_range_original_sanger.fastq FASTQ/solexa_example.fastq FASTQ/solexa_faked.fastq FASTQ/solexa_full_range_as_illumina.fastq FASTQ/solexa_full_range_as_sanger.fastq FASTQ/solexa_full_range_as_solexa.fastq FASTQ/solexa_full_range_original_solexa.fastq FASTQ/tricky.fastq FASTQ/wrapping_as_illumina.fastq FASTQ/wrapping_as_sanger.fastq FASTQ/wrapping_as_solexa.fastq FASTQ/wrapping_original_sanger.fastq FASTQ/zero_length.fastq GFF3/Homo_sapiens.GRCh38.85.n1000.gff3 GFF3/TAIR10.part.gff.bgz GFF3/TAIR10.part.gff.bgz.tbi GFF3/au9_scaffold_subset.gff3 GFF3/directives.gff3 GFF3/gff3_with_syncs.gff3 GFF3/hybrid1.gff3 GFF3/hybrid2.gff3 GFF3/index.toml GFF3/knownGene.gff3 GFF3/knownGene2.gff3 GFF3/knownGene_out_of_order.gff3 GFF3/messy_protein_domains.gff3 GFF3/mm9_sample_ensembl.gff3 GFF3/only_fasta.gff3 GFF3/records.gff3 GFF3/spec_eden.gff3 GFF3/spec_match.gff3 GFF3/tomato_chr4_head.gff3 GFF3/tomato_test.gff3 LSM/BLOSUM62 LSM/NUC.4.4 LSM/commented.tab LSM/index.toml LSM/ints.tab PDB/1AKE.pdb PDB/1AKE_err_a.pdb PDB/1AKE_err_b.pdb PDB/1AKE_err_c.pdb PDB/1EN2.pdb PDB/1SSU.pdb PDB/1SSU_err.pdb PDB/index.toml Project.toml SAM/ce#1.sam SAM/ce#2.sam SAM/ce#5.sam SAM/ce#5b.sam SAM/ce#unmap.sam SAM/ce#unmap1.sam SAM/ce#unmap2.sam SAM/cigar-64k.sam SAM/ex1.sam SAM/ex1_header.sam SAM/index.toml SAM/sam1.sam SAM/sam2.sam SAM/xx#blank.sam SAM/xx#minimal.sam VCF/aa.vcf VCF/ad-bias.vcf VCF/adeno_virus.vcf VCF/af-dist.vcf VCF/empty.vcf VCF/example.vcf VCF/formatcols.vcf VCF/formatmissing.vcf VCF/idx.vcf VCF/index.toml VCF/noroundtrip.vcf VCF/reheader.vcf VCF/trio.vcf VCF/view.vcf mmCIF/1AKE.cif mmCIF/1AKE_err.cif mmCIF/1EN2.cif mmCIF/1EN2_err.cif mmCIF/1SSU.cif mmCIF/index.toml src/FormatSpecimens.jl sticker.svg test/runtests.jl <<<<<< network # path=lcov.info SF:src/FormatSpecimens.jl DA:19,15 DA:22,30 DA:23,15 DA:27,0 DA:28,0 DA:32,0 DA:33,0 DA:34,0 DA:38,0 DA:39,0 DA:43,0 DA:44,0 DA:45,0 DA:49,0 DA:50,0 DA:54,0 DA:55,0 DA:56,0 DA:60,0 DA:61,0 DA:64,0 DA:65,0 DA:69,0 DA:70,0 DA:73,0 DA:74,0 DA:78,0 DA:81,0 DA:82,0 DA:87,0 DA:88,0 LH:3 LF:31 end_of_record <<<<<< EOF